Rhizobium sp. AP16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AP16 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is identified by its unique accession number AJVM00000000.1, indicating its genetic sequence has been cataloged for scientific reference. Rhizobium species are well-known for their ability to establish symbiotic relationships with legumes, facilitating nitrogen fixation in the soil. The presence of a single replicon suggests a streamlined genetic organization, which may be advantageous for efficient replication and resource utilization in its ecological niche. This trait can be indicative of the bacterium's adaptation to its environment, allowing it to thrive in various soil conditions where it interacts with plant roots. Biologically, Rhizobium sp. AP16 plays a crucial role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth and contributing to the overall health of the ecosystem. The mutualistic relationship between Rhizobium species and legumes is vital for sustainable agriculture, as it reduces the need for chemical fertilizers and promotes biodiversity in soil microbiomes. The study of Rhizobium sp. AP16, with its specific traits, contributes to our understanding of microbial ecology and the importance of symbiotic interactions in nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AP16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AP16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AP16 PMI03_contig124.124, whole genome shotgun

Gene Summary

Adenine Count

1291982 bp

Thymine Count

1293636 bp

Guanine Count

1957393 bp

Cytosine Count

1954608 bp

Genome Length

6497619 bp

Protein-coding Genes

6104 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpase component of abc transporters with duplicated atpase domainPMI03_01879Not AvailableNegative1983844 - 198567367423.5
thiamine pyrophosphokinasePMI03_01880Not AvailableNegative1985676 - 198632923048.6
transcriptional regulatorPMI03_01881Not AvailableNegative1986394 - 198692119439.7
arabinose efflux permease family proteinPMI03_01882Not AvailablePositive1987139 - 198867453070.2
thiamine abc transporter, periplasmic binding proteinPMI03_01884Not AvailablePositive1988912 - 198994037119.1
thiamine abc transporter, permease proteinPMI03_01885Not AvailablePositive1989948 - 199158857565.7
abc-type thiamine transport system, atpase componentPMI03_01886Not AvailablePositive1991581 - 199230926320.6
putative zn-dependent proteasePMI03_01887Not AvailablePositive1992524 - 199413158109.8
rna polymerase sigma factor, sigma-70 familyPMI03_01888Not AvailableNegative1994286 - 199514632252.7
card-like transcriptional regulatorPMI03_01889Not AvailableNegative1995553 - 199612521406.6

Displaying genes 1901 – 1910 of 6175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.