Rhizobium sp. AP16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AP16 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This species is identified by its unique accession number AJVM00000000.1, indicating its genetic sequence has been cataloged for scientific reference. Rhizobium species are well-known for their ability to establish symbiotic relationships with legumes, facilitating nitrogen fixation in the soil. The presence of a single replicon suggests a streamlined genetic organization, which may be advantageous for efficient replication and resource utilization in its ecological niche. This trait can be indicative of the bacterium's adaptation to its environment, allowing it to thrive in various soil conditions where it interacts with plant roots. Biologically, Rhizobium sp. AP16 plays a crucial role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth and contributing to the overall health of the ecosystem. The mutualistic relationship between Rhizobium species and legumes is vital for sustainable agriculture, as it reduces the need for chemical fertilizers and promotes biodiversity in soil microbiomes. The study of Rhizobium sp. AP16, with its specific traits, contributes to our understanding of microbial ecology and the importance of symbiotic interactions in nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AP16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AP16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AP16 PMI03_contig124.124, whole genome shotgun

Gene Summary

Adenine Count

1291982 bp

Thymine Count

1293636 bp

Guanine Count

1957393 bp

Cytosine Count

1954608 bp

Genome Length

6497619 bp

Protein-coding Genes

6104 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine-binding periplasmic proteinPMI03_00090Not AvailableNegative101635 - 10267537766.7
glycine/d-amino acid oxidase, deaminatingPMI03_00091Not AvailableNegative102740 - 10404746530.7
haloacid dehalogenase superfamily enzyme, subfamily iaPMI03_00092Not AvailableNegative104057 - 10478826574.3
spermidine/putrescine abc transporter atp-binding subunitPMI03_00093Not AvailableNegative104830 - 10592140016.1
transcriptional regulatorPMI03_00094Not AvailablePositive106156 - 10711835124.2
abc-type polar amino acid transport system, atpase componentPMI03_00095Not AvailablePositive107547 - 10831127620.6
amine acid abc transporter, permease protein, 3-tm region, his/glu/gln/arg/opine familyPMI03_00096Not AvailablePositive108308 - 10895223139.9
amine acid abc transporter, permease protein, 3-tm region, his/glu/gln/arg/opine familyPMI03_00097Not AvailablePositive108952 - 10961423489.2
periplasmic component of amino acid abc-type transporter/signal transduction systemPMI03_00098Not AvailablePositive109639 - 11047829650.6
asp/glu/hydantoin racemasePMI03_00099Not AvailablePositive110547 - 11128126884.4

Displaying genes 111 – 120 of 6175 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.