Xanthomarina gelatinilytica

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Xanthomarina

Description

Xanthomarina gelatinilytica is a marine bacterium distinguished by its single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in marine environments. This organism is catalogued under the accession number DPRK00000000.1, providing a reference point for genomic studies and further taxonomic classification. The presence of a single replicon suggests that X. gelatinilytica may exhibit certain efficiencies in replication and gene regulation compared to bacteria with multiple replicons. This trait could be advantageous in fluctuating marine ecosystems, where rapid response to environmental changes is crucial for survival. Xanthomarina gelatinilytica is likely involved in the marine ecosystem, potentially playing roles in nutrient cycling or interactions with other microorganisms. Its gelatinolytic capabilities suggest it may contribute to the degradation of organic matter in marine environments, thereby influencing the availability of nutrients for other organisms. This aspect of its biology highlights the interconnectedness of marine microbial communities and the importance of bacteria like X. gelatinilytica in maintaining ecological balance. Understanding the specific roles of such bacteria can provide insights into the functioning of marine ecosystems and the potential impacts of environmental changes on microbial diversity and activity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusXanthomarina
SpeciesXanthomarina gelatinilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Xanthomarina gelatinilytica isolate UBA10227

Gene Summary

Adenine Count

1018569 bp

Thymine Count

1001733 bp

Guanine Count

557921 bp

Cytosine Count

545740 bp

Genome Length

3260631 bp

Protein-coding Genes

3389 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioesteraseDHV22_16380Not AvailableNegative2830981 - 283138815125.3
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseDHV22_16390Not AvailableNegative2832660 - 283321419993.4
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseDHV22_16395Not AvailableNegative2833364 - 28335998529.13
phenylacetate-coa oxygenase subunit paajDHV22_16400Not AvailableNegative2833789 - 283428918212.1
phenylacetate-coa oxygenase subunit paaiDHV22_16405Not AvailableNegative2834359 - 283511128744.2
1,2-phenylacetyl-coa epoxidase subunit bDHV22_16410Not AvailableNegative2835250 - 283554011262.1
1,2-phenylacetyl-coa epoxidase subunit aDHV22_16415Not AvailableNegative2835620 - 283657636744.7
phenylacetic acid degradation proteinDHV22_16420Not AvailableNegative2836862 - 283759827690.2
phenylacetic acid degradation proteinDHV22_16425Not AvailableNegative2837761 - 283810913655.2
tetr/acrr family transcriptional regulatorDHV22_16430Not AvailableNegative2838356 - 283892221465.2

Displaying genes 3001 – 3010 of 3442 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.