Xanthomarina gelatinilytica str. AK20

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Xanthomarina

Description

Xanthomarina gelatinilytica strain AK20 is a notable bacterium characterized by having a single replicon. This trait is significant as it suggests a streamlined genetic organization, which can influence various aspects of its biology, including replication and gene regulation. The strain is cataloged under the accession number ANLA00000000.1, providing a reference for genetic and genomic studies. As a member of the genus Xanthomarina, this strain is likely to inhabit marine environments, where members of this genus are typically found. The ecological role of Xanthomarina species, including strain AK20, may involve the degradation of gelatinous substances, contributing to nutrient cycling in marine ecosystems. This activity not only aids in the breakdown of organic materials but may also support other marine organisms by making nutrients more accessible. Understanding the specific traits of Xanthomarina gelatinilytica strain AK20, particularly its single replicon, could provide insights into its adaptability and ecological interactions in marine environments. Further studies could elucidate its metabolic pathways and roles in biogeochemical cycles, enhancing our comprehension of microbial ecosystems in oceanic settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusXanthomarina
SpeciesXanthomarina gelatinilytica
StrainAK20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomarina gelatinilytica strain AK20 contig47, whole genome

Gene Summary

Adenine Count

981558 bp

Thymine Count

993067 bp

Guanine Count

542340 bp

Cytosine Count

538519 bp

Genome Length

3055484 bp

Protein-coding Genes

2841 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lycopene cyclaseD778_02193Not AvailableNegative883994 - 88468627044.5
beta-carotene hydroxylaseD778_02194Not AvailableNegative884690 - 88514518111.6
phytoene synthaseD778_02195Not AvailableNegative885169 - 88600532394.9
phytoene dehydrogenaseD778_02196Not AvailableNegative886097 - 88756055591.6
transforming growth factor-beta induced protein ig-h3 precursorD778_02197Not AvailableNegative887673 - 88899844565.2
transcriptional regulator, merr familyD778_02198Not AvailablePositive889249 - 89012133327.6
putative auxin-regulated proteinD778_02199Not AvailableNegative890449 - 89196358393.4
hypothetical proteinD778_02200Not AvailablePositive892127 - 89292130425.5
hypothetical proteinD778_02201Not AvailableNegative892924 - 89337016773.5
ssu ribosomal protein s21pD778_02202Not AvailableNegative893381 - 8935757885.76

Displaying genes 801 – 810 of 2878 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.