Xanthomarina gelatinilytica str. AK20

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Xanthomarina

Description

Xanthomarina gelatinilytica strain AK20 is a notable bacterium characterized by having a single replicon. This trait is significant as it suggests a streamlined genetic organization, which can influence various aspects of its biology, including replication and gene regulation. The strain is cataloged under the accession number ANLA00000000.1, providing a reference for genetic and genomic studies. As a member of the genus Xanthomarina, this strain is likely to inhabit marine environments, where members of this genus are typically found. The ecological role of Xanthomarina species, including strain AK20, may involve the degradation of gelatinous substances, contributing to nutrient cycling in marine ecosystems. This activity not only aids in the breakdown of organic materials but may also support other marine organisms by making nutrients more accessible. Understanding the specific traits of Xanthomarina gelatinilytica strain AK20, particularly its single replicon, could provide insights into its adaptability and ecological interactions in marine environments. Further studies could elucidate its metabolic pathways and roles in biogeochemical cycles, enhancing our comprehension of microbial ecosystems in oceanic settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusXanthomarina
SpeciesXanthomarina gelatinilytica
StrainAK20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomarina gelatinilytica strain AK20 contig47, whole genome

Gene Summary

Adenine Count

981558 bp

Thymine Count

993067 bp

Guanine Count

542340 bp

Cytosine Count

538519 bp

Genome Length

3055484 bp

Protein-coding Genes

2841 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate epimeraseD778_00891Not AvailablePositive2507648 - 250845430256.4
acetyltransferaseD778_00892Not AvailablePositive2508448 - 250896920067.0
protein ycegD778_00893Not AvailablePositive2508969 - 251001239700.0
hypothetical proteinD778_00894Not AvailablePositive2510063 - 251093533043.9
lysm domain proteinD778_00895Not AvailablePositive2511115 - 251170821954.2
tetrapyrrole (corrin-porphyrin) methylase family proteinD778_00896Not AvailableNegative2511712 - 251242826632.5
hypothetical proteinD778_00897Not AvailableNegative2512436 - 251385151295.9
low molecular weight protein tyrosine phosphataseD778_00898Not AvailableNegative2513930 - 251437016425.7
chromosomal replication initiator protein dnaaD778_00899Not AvailableNegative2514416 - 251584354208.3
4-hydroxybenzoyl-coa thioesteraseD778_00900Not AvailablePositive2516079 - 251642613143.3

Displaying genes 2351 – 2360 of 2878 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.