Xanthomarina gelatinilytica str. AK20

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Xanthomarina

Description

Xanthomarina gelatinilytica strain AK20 is a notable bacterium characterized by having a single replicon. This trait is significant as it suggests a streamlined genetic organization, which can influence various aspects of its biology, including replication and gene regulation. The strain is cataloged under the accession number ANLA00000000.1, providing a reference for genetic and genomic studies. As a member of the genus Xanthomarina, this strain is likely to inhabit marine environments, where members of this genus are typically found. The ecological role of Xanthomarina species, including strain AK20, may involve the degradation of gelatinous substances, contributing to nutrient cycling in marine ecosystems. This activity not only aids in the breakdown of organic materials but may also support other marine organisms by making nutrients more accessible. Understanding the specific traits of Xanthomarina gelatinilytica strain AK20, particularly its single replicon, could provide insights into its adaptability and ecological interactions in marine environments. Further studies could elucidate its metabolic pathways and roles in biogeochemical cycles, enhancing our comprehension of microbial ecosystems in oceanic settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusXanthomarina
SpeciesXanthomarina gelatinilytica
StrainAK20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomarina gelatinilytica strain AK20 contig47, whole genome

Gene Summary

Adenine Count

981558 bp

Thymine Count

993067 bp

Guanine Count

542340 bp

Cytosine Count

538519 bp

Genome Length

3055484 bp

Protein-coding Genes

2841 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulatorD778_00284Not AvailablePositive1874512 - 187536333030.6
Trna-valNot AvailableNot AvailablePositive1875432 - 1875506Not Available
dihydrofolate synthaseD778_00285Not AvailableNegative1875572 - 187674143233.2
hypothetical proteinD778_00286Not AvailableNegative1876786 - 187767931710.7
biopolymer transport protein exbd/tolrD778_00287Not AvailableNegative1877686 - 187807814581.1
mota/tolq/exbb proton channel family proteinD778_00288Not AvailableNegative1878078 - 187877925180.0
na+/h+ antiporter nhad typeD778_00289Not AvailableNegative1878834 - 188022851089.6
glu/leu/phe/val dehydrogenase family proteinD778_00290Not AvailableNegative1880241 - 188146744978.9
anhydro-n-acetylmuramic acid kinaseD778_00291Not AvailableNegative1881633 - 188273940527.4
butyryl-coa dehydrogenaseD778_00292Not AvailablePositive1882791 - 188393341603.8

Displaying genes 1741 – 1750 of 2878 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.