Dehalobacter sp. CF

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfitobacteriaceae

Genus

Dehalobacter

Description

Dehalobacter sp. CF is a Gram-negative bacterium characterized by a single replicon. Its genomic information can be accessed through the accession number NC_018867.1. This organism is notable for its potential role in bioremediation processes, specifically in the dehalogenation of various chlorinated compounds, which are often found in contaminated environments. As a member of the Dehalobacter genus, it is part of a broader group of microorganisms known for their ability to anaerobically dehalogenate halogenated organic compounds. This trait is significant for environmental microbiology, particularly in the context of pollution mitigation and soil restoration. The ability to break down toxic compounds not only contributes to detoxifying contaminated sites but also enables the restoration of ecological balance in affected ecosystems. Understanding the genomic features of Dehalobacter sp. CF, such as its single replicon structure, may provide insights into its metabolic pathways and mechanisms of action in dehalogenation. This knowledge can further inform strategies for utilizing this bacterium in environmental cleanup efforts, highlighting its importance in sustainable ecological practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusDehalobacter
SpeciesDehalobacter sp. CF
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalobacter sp. CF


Gene Summary

Adenine Count

838448 bp

Thymine Count

883571 bp

Guanine Count

648078 bp

Cytosine Count

721951 bp

Genome Length

3092048 bp

Protein-coding Genes

2915 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dmt family transporterDCF50_RS03730Not AvailableNegative788980 - 79002338030.9
carbon-nitrogen hydrolase family proteinDCF50_RS03735Q9JHW2Negative790072 - 79089931193.3
nadh-quinone oxidoreductase subunit nuobDCF50_RS03740Not AvailableNegative791124 - 79193929575.0
nadh-quinone oxidoreductase subunit cDCF50_RS03745P16431Negative792386 - 79405962612.3
hydrogenase 4 subunit fDCF50_RS03750P77437Negative794320 - 79580753421.6
nadh-quinone oxidoreductase subunit kDCF50_RS03755Not AvailableNegative795819 - 79647824451.0
respiratory chain complex i subunit 1 family proteinDCF50_RS03760Not AvailableNegative796471 - 79746635930.8
proton-conducting transporter membrane subunitDCF50_RS03765P23482Negative797507 - 79955874763.4
tetr/acrr family transcriptional regulatorDCF50_RS03770Not AvailableNegative799592 - 80014921431.9
ger(x)c family spore germination proteinDCF50_RS03775Not AvailablePositive800322 - 80155445710.6

Displaying genes 781 – 790 of 2991 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

151 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 151 metabolites

Health Effects

No health effects information available for this bacterium.