Dehalobacter sp. CF

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Desulfitobacteriaceae

Genus

Dehalobacter

Description

Dehalobacter sp. CF is a Gram-negative bacterium characterized by a single replicon. Its genomic information can be accessed through the accession number NC_018867.1. This organism is notable for its potential role in bioremediation processes, specifically in the dehalogenation of various chlorinated compounds, which are often found in contaminated environments. As a member of the Dehalobacter genus, it is part of a broader group of microorganisms known for their ability to anaerobically dehalogenate halogenated organic compounds. This trait is significant for environmental microbiology, particularly in the context of pollution mitigation and soil restoration. The ability to break down toxic compounds not only contributes to detoxifying contaminated sites but also enables the restoration of ecological balance in affected ecosystems. Understanding the genomic features of Dehalobacter sp. CF, such as its single replicon structure, may provide insights into its metabolic pathways and mechanisms of action in dehalogenation. This knowledge can further inform strategies for utilizing this bacterium in environmental cleanup efforts, highlighting its importance in sustainable ecological practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusDehalobacter
SpeciesDehalobacter sp. CF
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalobacter sp. CF, complete sequence.

Gene Summary

Adenine Count

838448 bp

Thymine Count

883571 bp

Guanine Count

648078 bp

Cytosine Count

721951 bp

Genome Length

3092048 bp

Protein-coding Genes

2915 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrogenase molybdenum-iron protein alpha chainDCF50_RS09895Q55029Negative2060190 - 206160253013.0
nitrogenase iron proteinDCF50_RS09900P00459Negative2061704 - 206256431379.8
p-ii family nitrogen regulatorDCF50_RS09905P51604Negative2062674 - 206302412875.8
p-ii family nitrogen regulatorDCF50_RS09910Q50786Negative2063039 - 206335611593.2
duf2334 domain-containing proteinDCF50_RS09915Not AvailablePositive2063741 - 206563970698.2
tocopherol cyclase family proteinDCF50_RS09920Not AvailableNegative2065719 - 206670837502.1
protein o-glcnacaseDCF50_RS09925Q89ZI2Negative2066779 - 206838359903.7
trypsin-like peptidase domain-containing proteinDCF50_RS15065Not AvailablePositive2069162 - 20693828705.78
duf1638 domain-containing proteinDCF50_RS09935Not AvailableNegative2069474 - 207016326144.8
hypothetical proteinDCF50_RS09940Not AvailableNegative2070244 - 207070817341.6

Displaying genes 2011 – 2020 of 2991 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

151 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 151 metabolites

Health Effects

No health effects information available for this bacterium.