Sinorhizobium fredii CCBAU 45436

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Sinorhizobium

Description

Sinorhizobium fredii CCBAU 45436 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and motility, facilitated by the presence of flagella. This species thrives in mesophilic temperature ranges, indicating its optimal growth conditions are within moderate temperature environments. The bacterium possesses a complex genomic structure with a total of five replicons, which may contribute to its adaptability and functional versatility. The specific genomic accessions for Sinorhizobium fredii CCBAU 45436 are NZ_CP029235.1, NZ_CP029231.1, NZ_CP029233.1, NZ_CP029232.1, and NZ_CP029234.1, allowing for further genetic studies and insights into its biological functions. Sinorhizobium fredii is known for its symbiotic relationship with leguminous plants, particularly in nitrogen fixation. This ecological function plays a vital role in enhancing soil fertility and supporting plant growth. The ability of this bacterium to thrive in aerobic conditions and its motility may facilitate its colonization of plant roots, thereby promoting effective symbiosis. Understanding the traits of Sinorhizobium fredii CCBAU 45436 can provide valuable insights into its role in agricultural ecosystems and its potential applications in sustainable farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusSinorhizobium
SpeciesSinorhizobium fredii
StrainCCBAU 45436

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Sinorhizobium fredii CCBAU 45436
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinorhizobium fredii CCBAU 45436 plasmid pSF45436e, complete

Gene Summary

Adenine Count

33865 bp

Thymine Count

34187 bp

Guanine Count

51086 bp

Cytosine Count

51335 bp

Genome Length

170473 bp

Protein-coding Genes

153 genes

Non-Coding Genes

9 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna ligase dAB395_RS14930Not AvailablePositive3032527 - 303512795437.5
tol-pal system-associated acyl-coa thioesteraseAB395_RS14935Not AvailableNegative3035189 - 303564116716.4
nad-dependent epimerase/dehydratase family proteinAB395_RS14940Not AvailablePositive3035767 - 303698745716.6
glycosyltransferaseAB395_RS14945Not AvailablePositive3036984 - 303786533117.4
nad-dependent epimerase/dehydratase family proteinAB395_RS14950Not AvailablePositive3037862 - 303875831838.7
metallophosphoesteraseAB395_RS14955Not AvailableNegative3038945 - 303984732423.1
holliday junction branch migration dna helicase ruvbAB395_RS14960Not AvailableNegative3039850 - 304089038203.3
holliday junction branch migration protein ruvaAB395_RS14965Not AvailableNegative3041037 - 304165421270.8
crossover junction endodeoxyribonuclease ruvcAB395_RS14970Not AvailableNegative3041936 - 304244818042.0
llm class flavin-dependent oxidoreductaseAB395_RS14975Not AvailablePositive3042617 - 304361836017.5

Displaying genes 3081 – 3090 of 6585 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

316 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 316 metabolites

Health Effects

No health effects information available for this bacterium.