Treponema socranskii subsp. paredis ATCC 35535

Gram-negativeSpirilla

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema socranskii subsp. paredis ATCC 35535 is a Gram-negative bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its motility. This organism is classified under the genus Treponema, which includes various species known for their role in human and animal health. T. socranskii subsp. paredis is notable for having a single replicon, indicating a streamlined genetic structure. The accession number for this strain is ATFD00000000.1, which can be used for reference in genomic databases and further studies. In terms of biological and ecological insights, Treponema species, including T. socranskii, are often associated with anaerobic environments, such as those found in the oral cavity and gastrointestinal tracts of mammals. Their presence in these environments suggests that they may play a role in the microbiome, potentially influencing health and disease states. Understanding the specific traits of T. socranskii subsp. paredis, particularly its motility and genetic configuration, can provide a deeper insight into its ecological niche and the functional roles it may serve in complex microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema socranskii
Strainsubsp. paredis ATCC 35535

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema socranskii subsp. paredis ATCC 35535
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema socranskii subsp. paredis ATCC 35535

Gene Summary

Adenine Count

704661 bp

Thymine Count

708421 bp

Guanine Count

642887 bp

Cytosine Count

675805 bp

Genome Length

2731774 bp

Protein-coding Genes

2426 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated endoribonuclease cas2HMPREF1221_01577Not AvailableNegative1728132 - 172841911033.5
crispr-associated endonuclease cas1, subtype i-c/dvulgHMPREF1221_01578Not AvailableNegative1728435 - 172946638946.3
crispr-associated protein cas4HMPREF1221_01579Not AvailableNegative1729481 - 173011924257.9
crispr-associated protein cas7/csd2, subtype i-c/dvulgHMPREF1221_01580Not AvailableNegative1730128 - 173097630938.5
crispr-associated protein cas8c/csd1, subtype i-c/dvulgHMPREF1221_01581Not AvailableNegative1730982 - 173285071029.2
crispr-associated protein cas5, subtype i-c/dvulgHMPREF1221_01582Not AvailableNegative1732847 - 173353026408.3
crispr-associated helicase cas3HMPREF1221_01583Not AvailableNegative1733600 - 173607492401.0
hypothetical proteinHMPREF1221_01584Not AvailableNegative1736182 - 17363647294.68
hypothetical proteinHMPREF1221_01585Not AvailableNegative1736657 - 173768537493.6
hypothetical proteinHMPREF1221_01586Not AvailableNegative1737762 - 173808812435.9

Displaying genes 1581 – 1590 of 2483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.