Treponema socranskii subsp. paredis ATCC 35535

Gram-negativeSpirilla

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema socranskii subsp. paredis ATCC 35535 is a Gram-negative bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its motility. This organism is classified under the genus Treponema, which includes various species known for their role in human and animal health. T. socranskii subsp. paredis is notable for having a single replicon, indicating a streamlined genetic structure. The accession number for this strain is ATFD00000000.1, which can be used for reference in genomic databases and further studies. In terms of biological and ecological insights, Treponema species, including T. socranskii, are often associated with anaerobic environments, such as those found in the oral cavity and gastrointestinal tracts of mammals. Their presence in these environments suggests that they may play a role in the microbiome, potentially influencing health and disease states. Understanding the specific traits of T. socranskii subsp. paredis, particularly its motility and genetic configuration, can provide a deeper insight into its ecological niche and the functional roles it may serve in complex microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema socranskii
Strainsubsp. paredis ATCC 35535

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema socranskii subsp. paredis ATCC 35535
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema socranskii subsp. paredis ATCC 35535

Gene Summary

Adenine Count

704661 bp

Thymine Count

708421 bp

Guanine Count

642887 bp

Cytosine Count

675805 bp

Genome Length

2731774 bp

Protein-coding Genes

2426 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flavocytochrome cHMPREF1221_01334Not AvailableNegative1445900 - 144763960226.1
hypothetical proteinHMPREF1221_01335Not AvailablePositive1448021 - 14482488222.89
dna repair protein radaHMPREF1221_01336Not AvailableNegative1448301 - 144965648185.3
hypothetical proteinHMPREF1221_01337Not AvailableNegative1449756 - 145107247748.0
rna polymerase sigma-54 factorHMPREF1221_01338Not AvailablePositive1451118 - 145258154411.9
hypothetical proteinHMPREF1221_01339Not AvailableNegative1452768 - 14529296126.41
hypothetical proteinHMPREF1221_01340Not AvailablePositive1452989 - 145338114430.2
hypothetical proteinHMPREF1221_01341Not AvailablePositive1453366 - 145440039108.2
large conductance mechanosensitive channel proteinHMPREF1221_01342Not AvailableNegative1454504 - 145494115642.3
hypothetical proteinHMPREF1221_01343Not AvailablePositive1455246 - 145619634023.8

Displaying genes 1341 – 1350 of 2483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.