Vibrio ruber DSM 16370

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ruber DSM 16370 is a bacterial strain characterized by its single replicon, which indicates a streamlined genomic structure conducive to its ecological adaptability. The genome of this organism is captured in the accession FULE00000000.1, allowing for further study and analysis within the scientific community. Vibrio species are often found in marine environments, and their ecological roles can include participation in nutrient cycling and interaction with other marine organisms. While specific ecological interactions for Vibrio ruber DSM 16370 are not provided, members of the Vibrio genus are known for their diverse metabolic capabilities, which can influence their survival and proliferation in varying environmental conditions. The single replicon trait may suggest a potential for rapid replication under favorable conditions, which is a common characteristic of many marine bacteria. This could allow Vibrio ruber DSM 16370 to thrive in fluctuating environments, adapting to changes in nutrient availability or salinity. Understanding the genomic structure and ecological roles of strains like Vibrio ruber DSM 16370 can contribute to our overall knowledge of marine microbiology and the functions these organisms serve in aquatic ecosystems. Further research could elucidate the specific interactions and contributions of this strain to its habitat, enhancing our appreciation of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ruber
StrainDSM 16370

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ruber DSM 16370
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ruber DSM 16370 strain CECT 7878T genome assembly, contig:

Gene Summary

Adenine Count

1245645 bp

Thymine Count

1260590 bp

Guanine Count

1061585 bp

Cytosine Count

1055177 bp

Genome Length

4622997 bp

Protein-coding Genes

3879 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2,3-diketo-l-gulonate trap transporter small permease protein yiamVR7878_03492Not AvailablePositive4000960 - 400148719394.4
sialic acid trap transporter permease protein siatVR7878_03493Not AvailablePositive4001498 - 400279945497.0
alpha-xylosidaseVR7878_03494Not AvailablePositive4002857 - 400523290960.7
polyol:nadp oxidoreductaseVR7878_03495Not AvailablePositive4005245 - 400672354426.8
uronate isomeraseVR7878_03496Not AvailablePositive4006720 - 400813253764.6
2-dehydro-3-deoxygluconokinaseVR7878_03497Not AvailablePositive4008136 - 400908934980.8
putative khg/kdpg aldolaseVR7878_03498Not AvailablePositive4009102 - 400973122363.4
carbapenam-3-carboxylate synthaseVR7878_03499Not AvailablePositive4010473 - 401198457155.8
putative enoyl-coa hydratase echa8VR7878_03500Not AvailablePositive4011989 - 401275628176.7
(5r)-carbapenem-3-carboxylate synthaseVR7878_03501Not AvailablePositive4012762 - 401359532405.2

Displaying genes 3521 – 3530 of 4030 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.