Vibrio ruber DSM 16370

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ruber DSM 16370 is a bacterial strain characterized by its single replicon, which indicates a streamlined genomic structure conducive to its ecological adaptability. The genome of this organism is captured in the accession FULE00000000.1, allowing for further study and analysis within the scientific community. Vibrio species are often found in marine environments, and their ecological roles can include participation in nutrient cycling and interaction with other marine organisms. While specific ecological interactions for Vibrio ruber DSM 16370 are not provided, members of the Vibrio genus are known for their diverse metabolic capabilities, which can influence their survival and proliferation in varying environmental conditions. The single replicon trait may suggest a potential for rapid replication under favorable conditions, which is a common characteristic of many marine bacteria. This could allow Vibrio ruber DSM 16370 to thrive in fluctuating environments, adapting to changes in nutrient availability or salinity. Understanding the genomic structure and ecological roles of strains like Vibrio ruber DSM 16370 can contribute to our overall knowledge of marine microbiology and the functions these organisms serve in aquatic ecosystems. Further research could elucidate the specific interactions and contributions of this strain to its habitat, enhancing our appreciation of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ruber
StrainDSM 16370

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ruber DSM 16370
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ruber DSM 16370 strain CECT 7878T genome assembly, contig:

Gene Summary

Adenine Count

1245645 bp

Thymine Count

1260590 bp

Guanine Count

1061585 bp

Cytosine Count

1055177 bp

Genome Length

4622997 bp

Protein-coding Genes

3879 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosylglycinamide formyltransferase 2VR7878_02035Not AvailableNegative2347888 - 234906342457.5
cytidine deaminaseVR7878_02036Not AvailableNegative2349208 - 235009532317.0
inner membrane protein yohkVR7878_02037Not AvailableNegative2350243 - 235093224940.6
holin-like protein cidaVR7878_02038Not AvailableNegative2350945 - 235126511601.0
exodeoxyribonuclease iVR7878_02039Not AvailableNegative2351408 - 235283255159.3
hypothetical proteinVR7878_02040Not AvailablePositive2353344 - 235394022611.2
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseVR7878_02066Not AvailablePositive2371946 - 237298035992.9
cobalamin synthaseVR7878_02067Not AvailablePositive2372974 - 237376228672.3
succinylglutamate desuccinylaseVR7878_02068Not AvailablePositive2373979 - 237500738867.2
vitamin b12 import system permease protein btucVR7878_02069Not AvailablePositive2375156 - 237615135965.8

Displaying genes 2121 – 2130 of 4030 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.