Vibrio ruber DSM 16370

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ruber DSM 16370 is a bacterial strain characterized by its single replicon, which indicates a streamlined genomic structure conducive to its ecological adaptability. The genome of this organism is captured in the accession FULE00000000.1, allowing for further study and analysis within the scientific community. Vibrio species are often found in marine environments, and their ecological roles can include participation in nutrient cycling and interaction with other marine organisms. While specific ecological interactions for Vibrio ruber DSM 16370 are not provided, members of the Vibrio genus are known for their diverse metabolic capabilities, which can influence their survival and proliferation in varying environmental conditions. The single replicon trait may suggest a potential for rapid replication under favorable conditions, which is a common characteristic of many marine bacteria. This could allow Vibrio ruber DSM 16370 to thrive in fluctuating environments, adapting to changes in nutrient availability or salinity. Understanding the genomic structure and ecological roles of strains like Vibrio ruber DSM 16370 can contribute to our overall knowledge of marine microbiology and the functions these organisms serve in aquatic ecosystems. Further research could elucidate the specific interactions and contributions of this strain to its habitat, enhancing our appreciation of microbial diversity in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ruber
StrainDSM 16370

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ruber DSM 16370
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ruber DSM 16370 strain CECT 7878T genome assembly, contig:

Gene Summary

Adenine Count

1245645 bp

Thymine Count

1260590 bp

Guanine Count

1061585 bp

Cytosine Count

1055177 bp

Genome Length

4622997 bp

Protein-coding Genes

3879 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine import atp-binding protein potaVR7878_01975Not AvailablePositive2282664 - 228378842154.8
spermidine/putrescine transport system permease protein potbVR7878_01976Not AvailablePositive2283769 - 228462631971.8
inner membrane abc transporter permease protein ydcvVR7878_01977Not AvailablePositive2284630 - 228541229122.7
spermidine/putrescine-binding periplasmic protein precursorVR7878_01978Not AvailablePositive2285573 - 228661338992.3
nad-dependent protein deacylaseVR7878_01979Not AvailableNegative2286717 - 228744526853.9
serine transporterVR7878_01980Not AvailableNegative2287690 - 228894345427.8
ammonia channel precursorVR7878_01981Not AvailableNegative2289232 - 229045243320.2
hypothetical proteinVR7878_01982Not AvailableNegative2290777 - 229116015003.2
transcriptional regulatory protein zrarVR7878_01983Not AvailableNegative2291390 - 229276352199.7
molybdenum cofactor guanylyltransferaseVR7878_01984Not AvailablePositive2293070 - 229366022035.3

Displaying genes 2061 – 2070 of 4030 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.