Pseudothermotoga hypogea DSM 11164 = NBRC 106472

Gram-negativeRodanaerobic

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Pseudothermotoga

Description

Pseudothermotoga hypogea DSM 11164, also known as NBRC 106472, is a Gram-negative, rod-shaped bacterium that exhibits anaerobic growth. This organism is characterized by the presence of flagella, which contribute to its motility in an anaerobic environment. Pseudothermotoga hypogea has a single replicon, indicating a streamlined genetic organization. The strain is significant for its metabolic capabilities, as it thrives in environments devoid of oxygen, which is typical for members of the genus Pseudothermotoga. This genus is known for its thermophilic traits, often found in high-temperature environments such as geothermal hot springs and deep-sea hydrothermal vents. The accession number for Pseudothermotoga hypogea is NZ_CP007141.1, which allows for further exploration of its genomic features and potential biotechnological applications. The ability of Pseudothermotoga hypogea to grow in anaerobic conditions suggests its role in biogeochemical cycles, particularly in the breakdown of organic matter in thermophilic habitats. This trait may also provide insights into the evolutionary adaptations of bacteria to extreme environments, highlighting the ecological importance of anaerobic microorganisms in nutrient cycling and energy flow within their respective ecosystems.

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusPseudothermotoga
SpeciesPseudothermotoga hypogea
StrainDSM 11164 = NBRC 106472

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pseudothermotoga hypogea DSM 11164 = NBRC 106472
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164

Gene Summary

Adenine Count

544842 bp

Thymine Count

549276 bp

Guanine Count

528467 bp

Cytosine Count

542831 bp

Genome Length

2165416 bp

Protein-coding Genes

2105 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnAJ81_RS04095A8F8C2Positive805792 - 80680538640.0
pasta domain-containing proteinAJ81_RS04100Not AvailablePositive806763 - 80728419101.7
ribosome small subunit-dependent gtpase aAJ81_RS04105Q9X242Positive807286 - 80815833022.4
ribulose-phosphate 3-epimeraseAJ81_RS04110O34557Positive808155 - 80881124406.1
rdgb/ham1 family non-canonical purine ntp pyrophosphataseAJ81_RS04115Q9WY06Positive808799 - 80938322032.7
leucine--trna ligaseAJ81_RS04120A8F8B7Positive809398 - 81184594315.5
amidohydrolase family proteinAJ81_RS04125P94211Positive811884 - 81347359484.9
low-specificity l-threonine aldolaseAJ81_RS04130Q8RXU4Positive813485 - 81451937989.1
cupin domain-containing proteinAJ81_RS04135Not AvailableNegative814523 - 81484011706.2
sdr family oxidoreductaseAJ81_RS04140Q56318Negative815412 - 81618228071.8

Displaying genes 831 – 840 of 2157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

120 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 120 metabolites

Health Effects

No health effects information available for this bacterium.