Pseudothermotoga hypogea DSM 11164 = NBRC 106472

Gram-negativeRodanaerobic

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Pseudothermotoga

Description

Pseudothermotoga hypogea DSM 11164, also known as NBRC 106472, is a Gram-negative, rod-shaped bacterium that exhibits anaerobic growth. This organism is characterized by the presence of flagella, which contribute to its motility in an anaerobic environment. Pseudothermotoga hypogea has a single replicon, indicating a streamlined genetic organization. The strain is significant for its metabolic capabilities, as it thrives in environments devoid of oxygen, which is typical for members of the genus Pseudothermotoga. This genus is known for its thermophilic traits, often found in high-temperature environments such as geothermal hot springs and deep-sea hydrothermal vents. The accession number for Pseudothermotoga hypogea is NZ_CP007141.1, which allows for further exploration of its genomic features and potential biotechnological applications. The ability of Pseudothermotoga hypogea to grow in anaerobic conditions suggests its role in biogeochemical cycles, particularly in the breakdown of organic matter in thermophilic habitats. This trait may also provide insights into the evolutionary adaptations of bacteria to extreme environments, highlighting the ecological importance of anaerobic microorganisms in nutrient cycling and energy flow within their respective ecosystems.

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusPseudothermotoga
SpeciesPseudothermotoga hypogea
StrainDSM 11164 = NBRC 106472

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pseudothermotoga hypogea DSM 11164 = NBRC 106472
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain DSM 11164

Gene Summary

Adenine Count

544842 bp

Thymine Count

549276 bp

Guanine Count

528467 bp

Cytosine Count

542831 bp

Genome Length

2165416 bp

Protein-coding Genes

2105 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbAJ81_RS08370Q49V41Positive1704941 - 170564225764.3
threonine/serine dehydrataseAJ81_RS08375P36007Positive1705642 - 170661035376.8
ribonuclease h-like ykuk family proteinAJ81_RS08380Not AvailableNegative1706612 - 170701615361.4
alkaline phosphatase family proteinAJ81_RS08385Not AvailableNegative1707066 - 170825344785.3
rubredoxinAJ81_RS08390Q9AL94Positive1708373 - 17085376050.93
biotin transporter bioyAJ81_RS08395O26990Negative1708553 - 170910419952.2
5-(carboxyamino)imidazole ribonucleotide mutaseAJ81_RS08405Q9UY68Positive1709948 - 171040615893.5
phosphoribosylaminoimidazolesuccinocarboxamide synthaseAJ81_RS08410B5Y714Positive1710422 - 171112627286.0
phosphoribosylformylglycinamidine synthase subunit pursAJ81_RS08415Q58988Positive1711132 - 17113869452.69
phosphoribosylformylglycinamidine synthase iAJ81_RS08420A8F8I4Positive1711383 - 171208726352.4

Displaying genes 1691 – 1700 of 2157 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

120 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 120 metabolites

Health Effects

No health effects information available for this bacterium.