Rubellimicrobium thermophilum DSM 16684

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Rubellimicrobium

Description

Rubellimicrobium thermophilum DSM 16684 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This species thrives optimally at a temperature of 32°C, indicating that it is mesophilic, as it grows best in moderate temperature conditions. R. thermophilum has a single replicon, reflecting a streamlined genetic organization that is typical for some bacteria. It is important to note that this organism does not form spores, which may influence its survival strategies in various environments. The accessions linked to R. thermophilum include AOLV00000000.1, which provides a genetic reference for further studies and potential applications in microbiology. Given its mesophilic nature, R. thermophilum could play a role in processes that occur in environments with moderate temperatures, such as soil and freshwater ecosystems. The aerobic requirement of this bacterium suggests that it might be involved in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling. Its specific temperature preferences and non-spore-forming characteristic could also indicate a niche specialization, limiting its distribution to habitats that maintain stable, moderate temperatures. This insight emphasizes the ecological role that R. thermophilum may play in its native habitats, potentially influencing biogeochemical processes in mesophilic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRubellimicrobium
SpeciesRubellimicrobium thermophilum
StrainDSM 16684

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubellimicrobium thermophilum DSM 16684 Ruthe_43, whole genome

Gene Summary

Adenine Count

488384 bp

Thymine Count

485350 bp

Guanine Count

1097794 bp

Cytosine Count

1087707 bp

Genome Length

3159235 bp

Protein-coding Genes

3221 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine cleavage system t protein (aminomethyltransferase)ruthe_00513Not AvailableNegative455105 - 45647851269.4
uncharacterized protein putative in bacteriaruthe_00514Not AvailableNegative456664 - 45771636787.7
4-carboxy-4-hydroxy-2-oxoadipate aldolaseruthe_00515Not AvailableNegative457709 - 45838023229.2
putative ring-cleavage extradiol dioxygenaseruthe_00516Not AvailableNegative458382 - 45934736360.5
hypothetical proteinruthe_00517Not AvailableNegative459385 - 4596188395.93
esterase/lipaseruthe_00518Not AvailableNegative459624 - 46106349269.5
uncharacterized protein, lmbe-like proteinruthe_00519Not AvailableNegative461136 - 46187327499.7
3-hydroxyisobutyrate dehydrogenaseruthe_00520Not AvailablePositive462032 - 46285328399.5
transcriptional regulatorruthe_00521Not AvailablePositive462850 - 46400141215.8
trap-type c4-dicarboxylate transport system, periplasmic componentruthe_00522Not AvailablePositive464534 - 46511820635.8

Displaying genes 511 – 520 of 3287 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.