Rubellimicrobium thermophilum DSM 16684

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Rubellimicrobium

Description

Rubellimicrobium thermophilum DSM 16684 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This species thrives optimally at a temperature of 32°C, indicating that it is mesophilic, as it grows best in moderate temperature conditions. R. thermophilum has a single replicon, reflecting a streamlined genetic organization that is typical for some bacteria. It is important to note that this organism does not form spores, which may influence its survival strategies in various environments. The accessions linked to R. thermophilum include AOLV00000000.1, which provides a genetic reference for further studies and potential applications in microbiology. Given its mesophilic nature, R. thermophilum could play a role in processes that occur in environments with moderate temperatures, such as soil and freshwater ecosystems. The aerobic requirement of this bacterium suggests that it might be involved in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling. Its specific temperature preferences and non-spore-forming characteristic could also indicate a niche specialization, limiting its distribution to habitats that maintain stable, moderate temperatures. This insight emphasizes the ecological role that R. thermophilum may play in its native habitats, potentially influencing biogeochemical processes in mesophilic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRubellimicrobium
SpeciesRubellimicrobium thermophilum
StrainDSM 16684

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubellimicrobium thermophilum DSM 16684 Ruthe_43, whole genome

Gene Summary

Adenine Count

488384 bp

Thymine Count

485350 bp

Guanine Count

1097794 bp

Cytosine Count

1087707 bp

Genome Length

3159235 bp

Protein-coding Genes

3221 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-carboxymuconolactone decarboxylaseruthe_02809Not AvailablePositive2624518 - 262490413999.7
protocatechuate 3,4-dioxygenase, beta subunitruthe_02810Not AvailablePositive2624901 - 262562327157.4
protocatechuate 3,4-dioxygenase, alpha subunitruthe_02811Not AvailablePositive2625626 - 262623722422.7
hypothetical proteinruthe_02812Not AvailablePositive2626240 - 262707930773.9
3-carboxy-cis,cis-muconate cycloisomeraseruthe_02813Not AvailablePositive2627136 - 262841944636.9
4-hydroxyphenylpyruvate dioxygenaseruthe_02814Not AvailableNegative2628431 - 262921928211.7
sugar phosphate isomerase/epimeraseruthe_02815Not AvailableNegative2629161 - 263030941590.6
shikimate 5-dehydrogenaseruthe_02816Not AvailableNegative2630306 - 263115129112.9
uncharacterized protein putative in bacteriaruthe_02817Not AvailableNegative2631148 - 263264752748.4
tripartite tricarboxylate transporter tctb familyruthe_02818Not AvailableNegative2632649 - 263316418777.9

Displaying genes 2771 – 2780 of 3287 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.