Rubellimicrobium thermophilum DSM 16684

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Rubellimicrobium

Description

Rubellimicrobium thermophilum DSM 16684 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This species thrives optimally at a temperature of 32°C, indicating that it is mesophilic, as it grows best in moderate temperature conditions. R. thermophilum has a single replicon, reflecting a streamlined genetic organization that is typical for some bacteria. It is important to note that this organism does not form spores, which may influence its survival strategies in various environments. The accessions linked to R. thermophilum include AOLV00000000.1, which provides a genetic reference for further studies and potential applications in microbiology. Given its mesophilic nature, R. thermophilum could play a role in processes that occur in environments with moderate temperatures, such as soil and freshwater ecosystems. The aerobic requirement of this bacterium suggests that it might be involved in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling. Its specific temperature preferences and non-spore-forming characteristic could also indicate a niche specialization, limiting its distribution to habitats that maintain stable, moderate temperatures. This insight emphasizes the ecological role that R. thermophilum may play in its native habitats, potentially influencing biogeochemical processes in mesophilic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRubellimicrobium
SpeciesRubellimicrobium thermophilum
StrainDSM 16684

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubellimicrobium thermophilum DSM 16684 Ruthe_43, whole genome

Gene Summary

Adenine Count

488384 bp

Thymine Count

485350 bp

Guanine Count

1097794 bp

Cytosine Count

1087707 bp

Genome Length

3159235 bp

Protein-coding Genes

3221 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid synthesisruthe_02654Not AvailableNegative2472774 - 247337621210.6
transcriptional regulator, gntr familyruthe_02655Not AvailablePositive2473477 - 247416024907.1
aldo/keto reductaseruthe_02656Not AvailableNegative2474244 - 247657482710.2
carbohydrate abc transporter atp-binding protein, cut1 familyruthe_02657Not AvailableNegative2476619 - 247768038353.7
carbohydrate abc transporter substrate-binding protein, cut1 familyruthe_02658Not AvailableNegative2477766 - 247921152850.5
abc-type sugar transport system, permease componentruthe_02659Not AvailableNegative2479231 - 247968616612.0
carbohydrate abc transporter membrane protein 1, cut1 familyruthe_02660Not AvailableNegative2480248 - 248113532679.0
putative zn-dependent hydrolase of the beta-lactamase fold proteinruthe_02661Not AvailablePositive2481421 - 248229031114.6
phosphoglycerate dehydrogenaseruthe_02662Not AvailableNegative2482296 - 248423968768.6
shikimate 5-dehydrogenaseruthe_02663Not AvailableNegative2484236 - 248519533980.5

Displaying genes 2621 – 2630 of 3287 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.