Malonomonas rubra DSM 5091

anaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Geopsychrobacteraceae

Genus

Malonomonas

Description

Malonomonas rubra DSM 5091 is an anaerobic bacterium that is characterized by its requirement for an oxygen-free environment for growth and metabolism. This organism possesses a single replicon, indicating a streamlined genetic structure which is typical for certain anaerobic bacteria. The strain is cataloged under the accession number FQZT00000000.1, providing a reference for genomic and taxonomic studies. Understanding the genomic makeup of Malonomonas rubra can offer insights into its metabolic pathways and potential applications in biotechnology or environmental microbiology. The anaerobic nature of Malonomonas rubra suggests that it may play a role in specific ecological niches where oxygen is limited or absent, such as in sediment layers of aquatic environments or in the guts of certain animals. Its metabolic processes can contribute to nutrient cycling and organic matter decomposition in these anaerobic habitats. The study of such microorganisms is crucial for comprehending the dynamics of microbial communities and their functions in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyGeopsychrobacteraceae
GenusMalonomonas
SpeciesMalonomonas rubra
StrainDSM 5091

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Malonomonas rubra DSM 5091 genome assembly, contig:

Gene Summary

Adenine Count

958164 bp

Thymine Count

925373 bp

Guanine Count

1012900 bp

Cytosine Count

1065194 bp

Genome Length

3961631 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two component transcriptional regulator, winged helix familySAMN02745165_01060Not AvailablePositive1133553 - 113427227009.6
dna-binding transcriptional regulator, lysr familySAMN02745165_01061Not AvailableNegative1134269 - 113518634426.3
hypothetical proteinSAMN02745165_01062Not AvailablePositive1135802 - 11360238627.49
protein of unknown functionSAMN02745165_01063Not AvailableNegative1136098 - 113677823888.5
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN02745165_01064Not AvailableNegative1136900 - 113858564079.4
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN02745165_01065Not AvailablePositive1138795 - 114031255920.5
response regulator receiver domain-containing proteinSAMN02745165_01066Not AvailableNegative1140321 - 114147542846.5
ca-activated chloride channel family proteinSAMN02745165_01067Not AvailablePositive1141689 - 114302048403.9
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN02745165_01068Not AvailablePositive1143032 - 114473563461.3
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN02745165_01069Not AvailablePositive1144735 - 114544826677.4

Displaying genes 1081 – 1090 of 3720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm00040892'-(5''-triphospho-alpha-D-ribosyl)-3'-dephospho-CoAC26H40N7O26P5SChemical structure of 2'-(5''-triphospho-alpha-D-ribosyl)-3'-dephospho-CoANot available
Average1053.56Da
Monoisotopic1053.046472079Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.