Geoalkalibacter ferrihydriticus DSM 17813

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Geoalkalibacteraceae

Genus

Geoalkalibacter

Description

Geoalkalibacter ferrihydriticus DSM 17813 is a species of bacteria characterized by having two replicons. This trait is significant as it may contribute to the organism's adaptability and genetic diversity. The organism is cataloged under the accession numbers JWJD00000000.1 and FNGU00000000.1, which are identifiers used in genomic databases to track its genomic information. As a member of the genus Geoalkalibacter, G. ferrihydriticus is likely adapted to alkaline environments, which is a common characteristic of bacteria in this group. The ability to thrive in such conditions may play a role in biogeochemical cycles, particularly in the cycling of iron and other minerals in alkaline habitats. From an ecological perspective, understanding the traits of G. ferrihydriticus can provide insights into the microbial communities that inhabit extreme environments. The presence of this bacterium in alkaline conditions suggests it could be involved in processes such as mineral weathering or bioremediation, where microorganisms contribute to the transformation of minerals and the detoxification of pollutants. Overall, G. ferrihydriticus serves as an important organism for studying microbial life in unique ecological niches and its role in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyGeoalkalibacteraceae
GenusGeoalkalibacter
SpeciesGeoalkalibacter ferrihydriticus
StrainDSM 17813

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geoalkalibacter ferrihydriticus DSM 17813 scaffold23, whole genome

Gene Summary

Adenine Count

798272 bp

Thymine Count

816455 bp

Guanine Count

1122002 bp

Cytosine Count

1102831 bp

Genome Length

3839692 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05660860_01589Not AvailableNegative1730267 - 17304827864.21
atp-binding cassette, subfamily f, uupSAMN05660860_01590Not AvailablePositive1730723 - 173260370465.1
hypothetical proteinSAMN05660860_01591Not AvailablePositive1732690 - 173314816944.3
hypothetical proteinSAMN05660860_01592Not AvailableNegative1733179 - 173350812289.8
16s rrna (cytosine1407-c5)-methyltransferaseSAMN05660860_01593Not AvailableNegative1733572 - 173452234698.1
transcriptional regulator, trar/dksa familySAMN05660860_01594Not AvailablePositive1734677 - 173510216725.7
nadh dehydrogenaseSAMN05660860_01595Not AvailablePositive1735158 - 17353948909.89
diguanylate cyclase (ggdef) domain-containing proteinSAMN05660860_01596Not AvailableNegative1735324 - 1738065101220.0
hypothetical proteinSAMN05660860_01597Not AvailablePositive1738154 - 173911335213.9
hypothetical proteinSAMN05660860_01598Not AvailableNegative1739119 - 173963119477.5

Displaying genes 4561 – 4570 of 6464 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

167 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000243heteropyrithiamineC11H13N4Chemical structure of heteropyrithiamineNot available
Average201.252Da
Monoisotopic201.113472855Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000590phloretateC9H9O3Chemical structure of phloretateNot available
Average165.169Da
Monoisotopic165.05571773Da

Displaying 1–10 of 167 metabolites

Health Effects

No health effects information available for this bacterium.