Desulfocicer vacuolatum DSM 3385

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfobacteria

Order

Desulfobacterales

Family

Desulfobacteraceae

Genus

Desulfocicer

Description

Desulfocicer vacuolatum DSM 3385 is a sulfate-reducing bacterium characterized by a single replicon. This organism is notable for its metabolic capabilities, particularly in environments where sulfate serves as an electron acceptor, which is a critical process in biogeochemical cycles, especially in anaerobic conditions. The strain is cataloged under the accession FWXY00000000.1, indicating its genomic data is available for further research and analysis. This genetic information can provide insights into its metabolic pathways and functional characteristics, which are essential for understanding its role in sulfur cycling. The ecological significance of Desulfocicer vacuolatum lies in its contribution to the degradation of organic matter in sulfate-rich environments, such as marine sediments and other anaerobic habitats. By reducing sulfate to sulfide, it plays a pivotal role in nutrient cycling, impacting the overall health and dynamics of microbial communities. In summary, Desulfocicer vacuolatum DSM 3385, with its single replicon and documented genomic sequence, represents an important player in sulfate reduction processes. Its metabolic activities contribute to the ecological balance in anaerobic environments, highlighting the interconnection between microbial life and biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfobacteraceae
GenusDesulfocicer
SpeciesDesulfocicer vacuolatum
StrainDSM 3385

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfobacterium vacuolatum DSM 3385 genome assembly, contig:

Gene Summary

Adenine Count

1351755 bp

Thymine Count

1340293 bp

Guanine Count

1157870 bp

Cytosine Count

1185435 bp

Genome Length

5035799 bp

Protein-coding Genes

4101 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
indolepyruvate ferredoxin oxidoreductase alpha subunitSAMN02746065_105158Not AvailablePositive1542538 - 154436765850.5
indolepyruvate ferredoxin oxidoreductase beta subunitSAMN02746065_105159Not AvailablePositive1544368 - 154489518560.5
phenylacetate-coa ligaseSAMN02746065_105160Not AvailablePositive1544937 - 154623248928.0
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN02746065_105161Not AvailablePositive1546607 - 154761136632.7
trap-type c4-dicarboxylate transport system, small permease componentSAMN02746065_105162Not AvailablePositive1547692 - 154816217572.3
trap transporter, dctm subunitSAMN02746065_105163Not AvailablePositive1548159 - 154946345573.1
putative zinc-or iron-chelating domain-containing proteinSAMN02746065_105164Not AvailablePositive1549793 - 155044624700.1
hypothetical proteinSAMN02746065_105165Not AvailableNegative1550571 - 155105017907.6
diguanylate cyclase (ggdef) domain-containing proteinSAMN02746065_105166Not AvailableNegative1551085 - 155205636514.6
two-component system, chemotaxis family, sensor kinase chea/two-component system, chemotaxis family, sensor histidine kinase and response regulator wspeSAMN02746065_105167Not AvailableNegative1552096 - 155439684637.1

Displaying genes 1301 – 1310 of 4164 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.