Anaerocolumna xylanovorans DSM 12503

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Anaerocolumna

Description

Anaerocolumna xylanovorans DSM 12503 is a Gram-positive, anaerobic bacterium characterized by its rod shape. This species is notable for its unique metabolic capabilities, particularly its ability to utilize xylan, a major component of plant hemicellulose, which suggests its potential role in the degradation of plant materials in various ecological contexts. The bacterium contains a single replicon, indicating a streamlined genomic structure that may contribute to its specialized metabolic functions. The accessions for this species are cataloged under FRFD00000000.1, providing a reference point for researchers interested in further genomic analysis and exploration of its metabolic pathways. Anaerocolumna xylanovorans is significant in the context of soil microbiology and the cycling of organic matter, as its ability to degrade xylan could facilitate the breakdown of lignocellulosic biomass. This process is important for nutrient recycling in anaerobic environments, such as wetlands and the digestive systems of herbivores. By participating in the decomposition of plant materials, Anaerocolumna xylanovorans may contribute to the overall health and sustainability of its ecological niche, underscoring the importance of anaerobic microorganisms in natural ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAnaerocolumna
SpeciesAnaerocolumna xylanovorans
StrainDSM 12503

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Anaerocolumna xylanovorans DSM 12503 genome assembly, contig:

Gene Summary

Adenine Count

1613921 bp

Thymine Count

1627509 bp

Guanine Count

1079207 bp

Cytosine Count

1094664 bp

Genome Length

5420325 bp

Protein-coding Genes

4544 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factor, ecf subfamilySAMN02745217_02244Not AvailableNegative2590190 - 259069319743.8
peroxiredoxin (alkyl hydroperoxide reductase subunit c)SAMN02745217_02245Not AvailablePositive2590902 - 259146520770.5
alkyl hydroperoxide reductase subunit fSAMN02745217_02246Not AvailablePositive2591478 - 259300455075.1
transcriptional regulator, laci familySAMN02745217_02247Not AvailablePositive2593219 - 259419336642.9
raffinose/stachyose/melibiose transport system substrate-binding proteinSAMN02745217_02248Not AvailablePositive2594431 - 259575047586.4
raffinose/stachyose/melibiose transport system permease proteinSAMN02745217_02249Not AvailablePositive2595853 - 259672832903.3
carbohydrate abc transporter membrane protein 2, cut1 family (tc 3.a.1.1.-)SAMN02745217_02250Not AvailablePositive2596728 - 259756731528.1
alpha,alpha-trehalose phosphorylaseSAMN02745217_02251Not AvailablePositive2597595 - 259991387354.5
beta-phosphoglucomutaseSAMN02745217_02252Not AvailablePositive2599939 - 260058923885.7
transcriptional regulator, laci familySAMN02745217_02253Not AvailableNegative2600707 - 260172337893.1

Displaying genes 2321 – 2330 of 4725 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.