Clostridium cylindrosporum DSM 605

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium cylindrosporum DSM 605 is an anaerobic bacterium that is characterized by its single replicon. This organism is part of the Clostridium genus, which is known for its diverse metabolic capabilities and ecological roles, particularly in anaerobic environments. The anaerobic requirement of C. cylindrosporum suggests its adaptation to environments devoid of oxygen, such as deep soil layers, sediments, or the gastrointestinal tracts of certain animals. Its ability to thrive in such conditions highlights its potential contribution to biogeochemical cycles, particularly in the degradation of organic matter and the fermentation processes involved in nutrient cycling. The strain is cataloged under the accession number LFVU00000000.1, indicating that genomic data is available for further research and analysis. Such data can be instrumental in understanding the specific metabolic pathways and ecological functions of this bacterium. In summary, Clostridium cylindrosporum DSM 605 exemplifies the significant role of anaerobic bacteria in ecological systems. Its single replicon suggests a streamlined genetic structure that may facilitate rapid adaptation to its ecological niche, thereby contributing to its survival and functionality in anaerobic environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium cylindrosporum
StrainDSM 605

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium cylindrosporum DSM 605 CLCY_1c, whole genome shotgun

Gene Summary

Adenine Count

916987 bp

Thymine Count

957905 bp

Guanine Count

404384 bp

Cytosine Count

455756 bp

Genome Length

2735032 bp

Protein-coding Genes

2572 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative abc transporter atp-binding proteinCLCY_3c02880Q8XK20Positive1753017 - 175472363699.0
abc-type cobalt transport system permease proteinCLCY_3c02890Not AvailablePositive1754723 - 175555931801.0
diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)CLCY_3c02900Q9I310Positive1755796 - 175735859945.8
murein dd-endopeptidase mephCLCY_3c02910P21171Positive1757632 - 175831824759.2
6-carboxy-5,6,7,8-tetrahydropterin synthase quedCLCY_3c02920Not AvailablePositive1758650 - 175907816477.6
7-carboxy-7-deazaguanine synthase queeCLCY_3c02930Q97D55Positive1759081 - 175974325230.2
7-cyano-7-deazaguanine synthase quecCLCY_3c02940A6LWG7Positive1759778 - 176049426916.4
nadph-dependent 7-cyano-7-deazaguanine reductase quefCLCY_3c02950A9VKS1Positive1760497 - 176100019485.2
transcriptional regulator, marr familyCLCY_3c02960P94578Positive1761123 - 176153016149.6
putative membrane protein yczeCLCY_3c02970Not AvailablePositive1761542 - 176224025097.5

Displaying genes 1751 – 1760 of 2701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

140 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 140 metabolites

Health Effects

No health effects information available for this bacterium.