Arenimonas oryziterrae DSM 21050 = YC6267

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Arenimonas

Description

Arenimonas oryziterrae DSM 21050, also designated as YC6267, is a Gram-negative, non-motile rod-shaped bacterium. This species is aerobic, requiring oxygen for its growth and metabolism. It is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. Arenimonas oryziterrae is characterized by its single replicon, which is a notable feature for its genomic structure. Importantly, this bacterium does not form spores, suggesting a reliance on other survival strategies in its environment rather than sporulation. The specific ecological role of Arenimonas oryziterrae has not been detailed, but its aerobic nature and mesophilic growth conditions imply potential involvement in nutrient cycling within soil or aquatic ecosystems, particularly in environments that maintain a temperature close to its optimal growth range. The bacterium's characteristics may allow it to thrive in specific niches where organic matter decomposition occurs, contributing to soil health or plant interactions in rice paddy ecosystems, as suggested by its nomenclature. In summary, Arenimonas oryziterrae DSM 21050 = YC6267 exemplifies a microbial organism adapted to moderate temperatures and aerobic conditions, highlighting its potential ecological significance in environments conducive to its growth parameters.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusArenimonas
SpeciesArenimonas oryziterrae
StrainDSM 21050 = YC6267

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Arenimonas oryziterrae DSM 21050 = YC6267 contig9, whole genome

Gene Summary

Adenine Count

531147 bp

Thymine Count

531157 bp

Guanine Count

1007318 bp

Cytosine Count

1023389 bp

Genome Length

3093011 bp

Protein-coding Genes

2878 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-2-dehydro-3-deoxyheptonate aldolaseN789_06160Not AvailableNegative779509 - 78093653100.4
hypothetical proteinN789_06165Not AvailableNegative780995 - 78151619121.2
50s ribosomal protein l17N789_06170Not AvailableNegative781677 - 78200612094.0
dna-directed rna polymerase subunit alphaN789_06175Not AvailableNegative782092 - 78308736572.2
30s ribosomal protein s4N789_06180Not AvailableNegative783110 - 78373923395.4
30s ribosomal protein s11N789_06185Not AvailableNegative783760 - 78414913757.8
30s ribosomal protein s13N789_06190Not AvailableNegative784159 - 78451513315.6
hypothetical proteinN789_06195Not AvailableNegative784812 - 78617949484.3
50s ribosomal protein l15N789_06200Not AvailableNegative786184 - 78662115309.0
50s ribosomal protein l30N789_06205Not AvailableNegative786642 - 7868246821.52

Displaying genes 771 – 780 of 2946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.