Arenimonas oryziterrae DSM 21050 = YC6267

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Arenimonas

Description

Arenimonas oryziterrae DSM 21050, also designated as YC6267, is a Gram-negative, non-motile rod-shaped bacterium. This species is aerobic, requiring oxygen for its growth and metabolism. It is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. Arenimonas oryziterrae is characterized by its single replicon, which is a notable feature for its genomic structure. Importantly, this bacterium does not form spores, suggesting a reliance on other survival strategies in its environment rather than sporulation. The specific ecological role of Arenimonas oryziterrae has not been detailed, but its aerobic nature and mesophilic growth conditions imply potential involvement in nutrient cycling within soil or aquatic ecosystems, particularly in environments that maintain a temperature close to its optimal growth range. The bacterium's characteristics may allow it to thrive in specific niches where organic matter decomposition occurs, contributing to soil health or plant interactions in rice paddy ecosystems, as suggested by its nomenclature. In summary, Arenimonas oryziterrae DSM 21050 = YC6267 exemplifies a microbial organism adapted to moderate temperatures and aerobic conditions, highlighting its potential ecological significance in environments conducive to its growth parameters.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusArenimonas
SpeciesArenimonas oryziterrae
StrainDSM 21050 = YC6267

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Arenimonas oryziterrae DSM 21050 = YC6267 contig9, whole genome

Gene Summary

Adenine Count

531147 bp

Thymine Count

531157 bp

Guanine Count

1007318 bp

Cytosine Count

1023389 bp

Genome Length

3093011 bp

Protein-coding Genes

2878 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinN789_05660Not AvailablePositive3005942 - 300701840552.4
hypothetical proteinN789_05665Not AvailableNegative3007037 - 300793631645.2
hypothetical proteinN789_05670Not AvailableNegative3007938 - 30080965291.67
atp-dependent metalloproteaseN789_05675Not AvailableNegative3008192 - 301010869959.1
hypothetical proteinN789_05680Not AvailableNegative3010124 - 301077724165.2
hypothetical proteinN789_05685Not AvailablePositive3010816 - 301112111036.5
hypothetical proteinN789_05690Not AvailablePositive3011127 - 301149513144.0
hypothetical proteinN789_05695Not AvailablePositive3011589 - 301197814148.6
methionine abc transporter atp-binding proteinN789_05700Not AvailablePositive3011989 - 301299336398.9
hypothetical proteinN789_05705Not AvailablePositive3012993 - 301366123510.7

Displaying genes 2861 – 2870 of 2946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.