Sphingopyxis sp. LC363

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC363 is a rod-shaped bacterium characterized by a single replicon. The strain has been cataloged in the National Center for Biotechnology Information (NCBI) with the accession number JNFC00000000.1. This organism belongs to the genus Sphingopyxis, which comprises bacteria known for their ability to degrade complex organic compounds. The rod shape of Sphingopyxis sp. LC363 suggests it may possess specific adaptations for its ecological niche, potentially influencing its motility and interaction with surrounding environments. The existence of a single replicon indicates a streamlined genetic structure, which could facilitate efficient replication and adaptation to varying environmental conditions. The ecological role of Sphingopyxis species is often associated with bioremediation processes, where they contribute to the breakdown of pollutants. This capability is particularly relevant in contaminated environments, where such bacteria can help mitigate the effects of environmental degradation. Understanding the traits of Sphingopyxis sp. LC363, including its morphological characteristics and genetic organization, is essential for exploring its potential applications in bioremediation and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC363
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC363 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

732616 bp

Thymine Count

732260 bp

Guanine Count

1372067 bp

Cytosine Count

1373814 bp

Genome Length

4210757 bp

Protein-coding Genes

3907 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining protein mredFG95_03164Not AvailablePositive3380554 - 338107519221.4
peptidoglycan glycosyltransferase precursorFG95_03165Not AvailablePositive3381094 - 338300169297.0
rod shape-determining protein rodaFG95_03166Not AvailablePositive3382998 - 338410439705.6
Trna-lysNot AvailableNot AvailablePositive3384217 - 3384292Not Available
hypothetical proteinFG95_03168Not AvailablePositive3384354 - 338482416572.4
metal ion efflux outer membrane factor protein family proteinFG95_03169Not AvailablePositive3384884 - 338616745924.0
cobalt/zinc/cadmium efflux rnd transporter,membrane fusion protein, czcb familyFG95_03170Not AvailablePositive3386164 - 338740544532.3
heavy metal efflux system proteinFG95_03171Not AvailablePositive3387395 - 3390640115351.0
arac family transcriptional regulatorFG95_03172Not AvailableNegative3390746 - 339152528261.1
membrane proteinFG95_03173Not AvailableNegative3391625 - 339191210113.7

Displaying genes 3161 – 3170 of 3957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.