Sphingopyxis sp. LC363

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC363 is a rod-shaped bacterium characterized by a single replicon. The strain has been cataloged in the National Center for Biotechnology Information (NCBI) with the accession number JNFC00000000.1. This organism belongs to the genus Sphingopyxis, which comprises bacteria known for their ability to degrade complex organic compounds. The rod shape of Sphingopyxis sp. LC363 suggests it may possess specific adaptations for its ecological niche, potentially influencing its motility and interaction with surrounding environments. The existence of a single replicon indicates a streamlined genetic structure, which could facilitate efficient replication and adaptation to varying environmental conditions. The ecological role of Sphingopyxis species is often associated with bioremediation processes, where they contribute to the breakdown of pollutants. This capability is particularly relevant in contaminated environments, where such bacteria can help mitigate the effects of environmental degradation. Understanding the traits of Sphingopyxis sp. LC363, including its morphological characteristics and genetic organization, is essential for exploring its potential applications in bioremediation and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC363
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC363 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

732616 bp

Thymine Count

732260 bp

Guanine Count

1372067 bp

Cytosine Count

1373814 bp

Genome Length

4210757 bp

Protein-coding Genes

3907 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fldx proteinFG95_02924Not AvailableNegative3118932 - 311979530084.2
putative lysr-type transcriptional regulatorFG95_02925Not AvailableNegative3119850 - 312107043470.1
4-carboxy-4-hydroxy-2-oxoadipate aldolaseFG95_02926Not AvailablePositive3121158 - 312182923435.3
hypothetical proteinFG95_02927Not AvailablePositive3121843 - 312287735668.4
fldb proteinFG95_02928Not AvailablePositive3122874 - 312377033083.4
putative transcriptional regulator, marrFG95_02929Not AvailableNegative3123838 - 312435019360.2
nicotinate-nucleotide pyrophosphorylaseFG95_02930Not AvailableNegative3124414 - 312528030201.4
putative phthalate dioxygenaseFG95_02931Not AvailableNegative3125280 - 312661149106.5
putative phthalate dihydrodiol dehydrogenaseFG95_02932Not AvailablePositive3126824 - 312791239428.7
putative 4,5-dihydroxyphthalate decarboxylaseFG95_02933Not AvailablePositive3127916 - 312890838171.7

Displaying genes 2921 – 2930 of 3957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.