Sphingopyxis sp. LC363

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC363 is a rod-shaped bacterium characterized by a single replicon. The strain has been cataloged in the National Center for Biotechnology Information (NCBI) with the accession number JNFC00000000.1. This organism belongs to the genus Sphingopyxis, which comprises bacteria known for their ability to degrade complex organic compounds. The rod shape of Sphingopyxis sp. LC363 suggests it may possess specific adaptations for its ecological niche, potentially influencing its motility and interaction with surrounding environments. The existence of a single replicon indicates a streamlined genetic structure, which could facilitate efficient replication and adaptation to varying environmental conditions. The ecological role of Sphingopyxis species is often associated with bioremediation processes, where they contribute to the breakdown of pollutants. This capability is particularly relevant in contaminated environments, where such bacteria can help mitigate the effects of environmental degradation. Understanding the traits of Sphingopyxis sp. LC363, including its morphological characteristics and genetic organization, is essential for exploring its potential applications in bioremediation and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC363
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC363 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

732616 bp

Thymine Count

732260 bp

Guanine Count

1372067 bp

Cytosine Count

1373814 bp

Genome Length

4210757 bp

Protein-coding Genes

3907 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine-monophosphate kinaseFG95_02771Not AvailablePositive2961942 - 296287432318.9
k(+)-insensitive pyrophosphate-energized proton pump precursorFG95_02772Not AvailablePositive2963056 - 296517071478.0
peptidaseFG95_02773Not AvailablePositive2965361 - 296743375422.2
short-chain dehydrogenase/reductase sdr precursorFG95_02774Not AvailableNegative2967458 - 296827627982.5
card family transcriptional regulatorFG95_02775Not AvailablePositive2968593 - 296912019900.9
trna pseudouridine synthase aFG95_02776Not AvailableNegative2969345 - 297008527197.4
methionyl-trna formyltransferaseFG95_02777Not AvailableNegative2970198 - 297111832449.6
recombination protein recrFG95_02778Not AvailablePositive2971343 - 297193921311.7
peptide deformylaseFG95_02779Not AvailablePositive2971971 - 297250420025.1
hsp-70 cofactorFG95_02780Not AvailableNegative2972690 - 297324719974.5

Displaying genes 2771 – 2780 of 3957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.