Sphingopyxis sp. LC363

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC363 is a rod-shaped bacterium characterized by a single replicon. The strain has been cataloged in the National Center for Biotechnology Information (NCBI) with the accession number JNFC00000000.1. This organism belongs to the genus Sphingopyxis, which comprises bacteria known for their ability to degrade complex organic compounds. The rod shape of Sphingopyxis sp. LC363 suggests it may possess specific adaptations for its ecological niche, potentially influencing its motility and interaction with surrounding environments. The existence of a single replicon indicates a streamlined genetic structure, which could facilitate efficient replication and adaptation to varying environmental conditions. The ecological role of Sphingopyxis species is often associated with bioremediation processes, where they contribute to the breakdown of pollutants. This capability is particularly relevant in contaminated environments, where such bacteria can help mitigate the effects of environmental degradation. Understanding the traits of Sphingopyxis sp. LC363, including its morphological characteristics and genetic organization, is essential for exploring its potential applications in bioremediation and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC363
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC363 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

732616 bp

Thymine Count

732260 bp

Guanine Count

1372067 bp

Cytosine Count

1373814 bp

Genome Length

4210757 bp

Protein-coding Genes

3907 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator receiver proteinFG95_02031Not AvailableNegative2196800 - 219807145394.7
pilus assembly protein cpadFG95_02032Not AvailableNegative2198068 - 219870922341.3
type ii and iii secretion system protein precursorFG95_02033Not AvailableNegative2198735 - 220021651720.7
flp pilus assembly cpab precursorFG95_02034Not AvailableNegative2200218 - 220125836268.5
peptidase a24a, prepilin type iv precursorFG95_02035Not AvailableNegative2201313 - 220179516819.5
fad dependent oxidoreductaseFG95_02036Not AvailablePositive2201835 - 220301941632.8
hypothetical proteinFG95_02037Not AvailablePositive2203107 - 22032836534.57
ribonuclease hFG95_02038Not AvailableNegative2203294 - 220376716951.1
homoserine kinaseFG95_02039Not AvailableNegative2203764 - 220472634704.4
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseFG95_02040Not AvailableNegative2204994 - 220597434616.7

Displaying genes 2031 – 2040 of 3957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.