Sphingopyxis sp. LC363

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC363 is a rod-shaped bacterium characterized by a single replicon. The strain has been cataloged in the National Center for Biotechnology Information (NCBI) with the accession number JNFC00000000.1. This organism belongs to the genus Sphingopyxis, which comprises bacteria known for their ability to degrade complex organic compounds. The rod shape of Sphingopyxis sp. LC363 suggests it may possess specific adaptations for its ecological niche, potentially influencing its motility and interaction with surrounding environments. The existence of a single replicon indicates a streamlined genetic structure, which could facilitate efficient replication and adaptation to varying environmental conditions. The ecological role of Sphingopyxis species is often associated with bioremediation processes, where they contribute to the breakdown of pollutants. This capability is particularly relevant in contaminated environments, where such bacteria can help mitigate the effects of environmental degradation. Understanding the traits of Sphingopyxis sp. LC363, including its morphological characteristics and genetic organization, is essential for exploring its potential applications in bioremediation and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC363
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC363 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

732616 bp

Thymine Count

732260 bp

Guanine Count

1372067 bp

Cytosine Count

1373814 bp

Genome Length

4210757 bp

Protein-coding Genes

3907 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfate adenylyltransferase subunit 2FG95_01971Not AvailablePositive2127767 - 212867234518.3
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase proteinFG95_01972Not AvailablePositive2128672 - 213057369593.2
inositol monophosphataseFG95_01973Not AvailablePositive2130583 - 213132926161.2
short chain dehydrogenaseFG95_01974Not AvailablePositive2131444 - 213220225294.6
alcohol dehydrogenase groes-like proteinFG95_01975Not AvailablePositive2132318 - 213346040255.9
short-chain dehydrogenase/reductase sdrFG95_01976Not AvailableNegative2133738 - 213445724837.5
excinuclease abc subunit cFG95_01977Not AvailablePositive2134526 - 213645771347.2
phenylacetic acid degradation-related proteinFG95_01978Not AvailablePositive2136569 - 213696113257.2
recombination protein oFG95_01979Not AvailablePositive2136949 - 213768625680.2
3-isopropylmalate dehydrogenaseFG95_01980Not AvailablePositive2137851 - 213889736211.7

Displaying genes 1971 – 1980 of 3957 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.