Marinobacter sp. P4B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Marinobacteraceae

Genus

Marinobacter

Description

Marinobacter sp. P4B1 is a notable microorganism characterized by the presence of flagella, which likely contribute to its motility in aquatic environments. This species possesses two replicons, indicating a complex genomic structure that may play a role in its adaptability and survival in various ecological niches. The genomic data for Marinobacter sp. P4B1 is accessible through the following accession numbers: LLXM00000000.1 and NZ_CM003615.1. The presence of flagella suggests that Marinobacter sp. P4B1 may engage in active movement, allowing it to navigate towards nutrient-rich areas or away from unfavorable conditions. This motility could enhance its survival and reproductive success in diverse marine habitats. Furthermore, having two replicons may provide a genetic advantage, facilitating the organism's response to environmental changes and its ability to assimilate different substrates. In summary, Marinobacter sp. P4B1 exhibits traits such as flagella presence and a dual-replicon structure, which likely contribute to its ecological adaptability. This adaptability may play a significant role in the organism's interactions within marine ecosystems, potentially influencing nutrient cycling and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyMarinobacteraceae
GenusMarinobacter
SpeciesMarinobacter sp. P4B1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marinobacter sp. P4B1 contig_217-216-200, whole genome shotgun

Gene Summary

Adenine Count

785718 bp

Thymine Count

774282 bp

Guanine Count

1086808 bp

Cytosine Count

1094069 bp

Genome Length

3740877 bp

Protein-coding Genes

3372 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer protein trafAQ621_RS00070Not AvailablePositive12276 - 1322935405.2
conjugal transfer protein trahAQ621_RS00075Not AvailablePositive13226 - 1461750962.9
conjugal transfer protein trag n-terminal domain-containing proteinAQ621_RS00080Not AvailablePositive14619 - 19073158374.0
hypothetical proteinAQ621_RS00085Not AvailableNegative19137 - 2021939089.4
hypothetical proteinAQ621_RS00090Not AvailableNegative20312 - 2116630664.7
hypothetical proteinAQ621_RS00095Not AvailableNegative21169 - 2169319259.7
hypothetical proteinAQ621_RS00100Not AvailableNegative21709 - 2205913038.2
parm/stba family proteinAQ621_RS00105Not AvailableNegative22066 - 2304335329.3
conjugative transfer protein mobi(a/c)AQ621_RS00110Not AvailablePositive24023 - 2447817609.0
ph domain-containing proteinAQ621_RS00115Not AvailablePositive24475 - 2552137790.5

Displaying genes 3451 – 3460 of 3611 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

266 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 266 metabolites

Health Effects

No health effects information available for this bacterium.