Simiduia agarivorans SA1 = DSM 21679

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and utilizes an organotrophic lifestyle, deriving energy from organic compounds. This microbe thrives optimally at a temperature of 32.0°C, indicating a preference for moderately warm environments. As an aerobic organism, S. agarivorans requires oxygen for its metabolic processes, which aligns with its classification as a chemotroph that relies on chemical sources of energy rather than photosynthesis. The specific ecological niche of Simiduia agarivorans has not been detailed in the provided traits; however, its characteristics suggest a potential role in the degradation of organic materials in oxygen-rich environments. The capacity to utilize organic substrates may facilitate nutrient cycling in its habitat, possibly contributing to the breakdown of complex organic molecules. This functional role could be particularly significant in marine ecosystems, where organic matter is abundant, and microbial decomposition is essential for maintaining ecological balance. Further exploration of its metabolic pathways and interactions within its environment could provide deeper insights into its ecological contributions and potential applications in bioremediation or organic waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia agarivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Simiduia agarivorans SA1 = DSM 21679

Accession NumberNC_018868.3

Gene Summary

Adenine Count

951810 bp

Thymine Count

947571 bp

Guanine Count

1201677 bp

Cytosine Count

1199168 bp

Genome Length

4300227 bp

Protein-coding Genes

3817 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ig-like domain-containing proteinM5M_RS20550Not Available+464 - 5356165990.0
m23 family metallopeptidaseM5M_RS00010Not Available+5448 - 626929759.6
trm112 family proteinM5M_RS00015C5BMQ2+6375 - 65757371.92
histidine triad nucleotide-binding proteinM5M_RS00020P73481+6576 - 692612603.4
alanine--trna ligaseM5M_RS00025Q21L68+6966 - 959394308.8
aspartate kinaseM5M_RS00030Q88EI9+9744 - 1098244356.2
carbon storage regulator csraM5M_RS00035Q21L66+11212 - 113946818.3
dicarboxylate/amino acid:cation symporterM5M_RS00040P21345+11897 - 1312042396.2
6-carboxytetrahydropterin synthaseM5M_RS00045Not Available-13155 - 1400031837.5
hamp domain-containing sensor histidine kinaseM5M_RS19210Q9KLK7+14219 - 1553847434.3

Displaying genes 1 – 10 of 3868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

255 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001785(2R,3R)-tartrateC4H6O6Chemical structure of (2R,3R)-tartrate87-69-4
Average150.0868Da
Monoisotopic150.0164379Da
BASm0001789(3R)-citramalateC5H6O5Chemical structure of (3R)-citramalateNot available
Average146.099Da
Monoisotopic146.0226205Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 41–50 of 255 metabolites