Simiduia agarivorans SA1 = DSM 21679

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is classified as an organotroph and chemotroph, indicating its ability to derive energy from organic compounds through chemical processes. Simiduia agarivorans thrives optimally at a temperature of 32°C and is categorized as mesophilic, suggesting that it grows best in moderate temperature ranges. In terms of genetic makeup, Simiduia agarivorans possesses a single replicon, which is notable for its genomic organization. The strain is cataloged under the accession number NC_018868.3, providing a reference for its genetic information and further studies. The ecological role of Simiduia agarivorans may be linked to its ability to degrade organic materials in marine environments, particularly in the context of agar, as its name suggests. This trait could contribute to nutrient cycling and the breakdown of complex organic substances in aquatic ecosystems. Its aerobic nature implies that it plays a role in oxygen-rich environments, potentially influencing microbial community dynamics and ecological interactions in its habitat. Understanding the characteristics and ecological contributions of Simiduia agarivorans can shed light on the functional diversity of marine microorganisms and their roles in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia agarivorans
StrainSA1 = DSM 21679

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Simiduia agarivorans SA1 = DSM 21679, complete sequence.

Gene Summary

Adenine Count

951810 bp

Thymine Count

947571 bp

Guanine Count

1201677 bp

Cytosine Count

1199168 bp

Genome Length

4300227 bp

Protein-coding Genes

3817 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bameM5M_RS16830O68562Negative3774644 - 377504815594.8
ferric iron uptake transcriptional regulatorM5M_RS16835Q03456Positive3775132 - 377553915416.3
dna repair protein recnM5M_RS16840P05824Negative3775699 - 377735760581.0
nucleotide exchange factor grpeM5M_RS16845Q21H35Positive3777553 - 377811620538.3
molecular chaperone dnakM5M_RS16850C5BQ33Positive3778242 - 378017368663.2
molecular chaperone dnajM5M_RS16855Q21H37Positive3780282 - 378140940408.9
4-hydroxy-tetrahydrodipicolinate reductaseM5M_RS16860C5BQ31Positive3781453 - 378225928078.6
yfir family proteinM5M_RS16865Not AvailablePositive3782428 - 378300020328.9
methyl-accepting chemotaxis proteinM5M_RS16870Q88NI1Positive3783045 - 378459553876.9
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitM5M_RS16875C5BQ30Positive3784931 - 378606740607.3

Displaying genes 3391 – 3400 of 3868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

255 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 255 metabolites

Health Effects

No health effects information available for this bacterium.