Simiduia agarivorans SA1 = DSM 21679

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is classified as an organotroph and chemotroph, indicating its ability to derive energy from organic compounds through chemical processes. Simiduia agarivorans thrives optimally at a temperature of 32°C and is categorized as mesophilic, suggesting that it grows best in moderate temperature ranges. In terms of genetic makeup, Simiduia agarivorans possesses a single replicon, which is notable for its genomic organization. The strain is cataloged under the accession number NC_018868.3, providing a reference for its genetic information and further studies. The ecological role of Simiduia agarivorans may be linked to its ability to degrade organic materials in marine environments, particularly in the context of agar, as its name suggests. This trait could contribute to nutrient cycling and the breakdown of complex organic substances in aquatic ecosystems. Its aerobic nature implies that it plays a role in oxygen-rich environments, potentially influencing microbial community dynamics and ecological interactions in its habitat. Understanding the characteristics and ecological contributions of Simiduia agarivorans can shed light on the functional diversity of marine microorganisms and their roles in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia agarivorans
StrainSA1 = DSM 21679

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Simiduia agarivorans SA1 = DSM 21679, complete sequence.

Gene Summary

Adenine Count

951810 bp

Thymine Count

947571 bp

Guanine Count

1201677 bp

Cytosine Count

1199168 bp

Genome Length

4300227 bp

Protein-coding Genes

3817 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeM5M_RS11725Q9I2S7Negative2638518 - 264046772203.4
cpxcg motif-containing cysteine-rich proteinM5M_RS19905Not AvailablePositive2640621 - 26408036670.89
hypothetical proteinM5M_RS11735Not AvailablePositive2640875 - 264145622381.9
hypothetical proteinM5M_RS11740Not AvailableNegative2641460 - 264190616104.4
putative hydro-lyaseM5M_RS11745P61788Positive2642027 - 264281828485.1
5-oxoprolinase subunit pxpaM5M_RS11750Q9I203Positive2642819 - 264356827279.8
5-oxoprolinase subunit pxpbM5M_RS11755P60495Positive2643561 - 264425024686.8
biotin-dependent carboxyltransferase family proteinM5M_RS11760Q7WY77Positive2644247 - 264519433268.0
duf4392 domain-containing proteinM5M_RS11765Q8BH86Positive2645191 - 264605130679.3
d-amino acid aminotransferaseM5M_RS11770G2JZ74Positive2646265 - 264712231717.9

Displaying genes 2361 – 2370 of 3868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

255 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 255 metabolites

Health Effects

No health effects information available for this bacterium.