Simiduia agarivorans SA1 = DSM 21679

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism is classified as an organotroph and chemotroph, indicating its ability to derive energy from organic compounds through chemical processes. Simiduia agarivorans thrives optimally at a temperature of 32°C and is categorized as mesophilic, suggesting that it grows best in moderate temperature ranges. In terms of genetic makeup, Simiduia agarivorans possesses a single replicon, which is notable for its genomic organization. The strain is cataloged under the accession number NC_018868.3, providing a reference for its genetic information and further studies. The ecological role of Simiduia agarivorans may be linked to its ability to degrade organic materials in marine environments, particularly in the context of agar, as its name suggests. This trait could contribute to nutrient cycling and the breakdown of complex organic substances in aquatic ecosystems. Its aerobic nature implies that it plays a role in oxygen-rich environments, potentially influencing microbial community dynamics and ecological interactions in its habitat. Understanding the characteristics and ecological contributions of Simiduia agarivorans can shed light on the functional diversity of marine microorganisms and their roles in environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia agarivorans
StrainSA1 = DSM 21679

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Simiduia agarivorans SA1 = DSM 21679, complete sequence.

Gene Summary

Adenine Count

951810 bp

Thymine Count

947571 bp

Guanine Count

1201677 bp

Cytosine Count

1199168 bp

Genome Length

4300227 bp

Protein-coding Genes

3817 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
quinone-dependent dihydroorotate dehydrogenaseM5M_RS01055B3PIL8Positive227093 - 22810935795.3
ribosome modulation factorM5M_RS01060Q21JW8Negative228245 - 2284487795.1
bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlmlM5M_RS01065B3PIL6Positive228926 - 23109481576.8
pyridoxal phosphate-dependent aminotransferaseM5M_RS01070Not AvailableNegative231067 - 23244050589.0
excinuclease abc subunit uvrbM5M_RS01075P72174Positive232547 - 23453574659.4
bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family proteinM5M_RS19235Q8KY50Negative234554 - 23697189265.0
pp2c family serine/threonine-protein phosphataseM5M_RS01085O34779Negative236981 - 23783230369.7
fha domain-containing proteinM5M_RS01090Not AvailablePositive238030 - 23889931189.3
duf5610 domain-containing proteinM5M_RS01095Not AvailablePositive238998 - 24007438532.2
glutaredoxin family proteinM5M_RS01100Not AvailablePositive240127 - 24041110228.2

Displaying genes 211 – 220 of 3868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

255 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 255 metabolites

Health Effects

No health effects information available for this bacterium.