Pseudoalteromonas rubra DSM 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra DSM 6842 is a rod-shaped bacterium characterized by its unique ecological niche and genetic structure. This species has been identified with two replicons, which may suggest a complex genomic organization that could confer various metabolic capabilities. The strain is cataloged under the accessions AHCD00000000.3 and NZ_AHCD03000044.1, providing a reference for further genomic studies. Pseudoalteromonas rubra is primarily found in marine environments, often associated with surfaces of marine organisms and sediments. This niche indicates its potential role in the marine ecosystem, possibly contributing to the degradation of organic materials and influencing nutrient cycling. The presence of multiple replicons might enable this bacterium to adapt efficiently to its environment, potentially enhancing its survival and functional versatility in various ecological contexts. Understanding the genetic and phenotypic traits of Pseudoalteromonas rubra DSM 6842 can provide insights into its ecological roles, including its interactions with other marine microorganisms and its contributions to marine biogeochemical processes. The study of such microorganisms is crucial for comprehending the dynamics of marine ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
StrainDSM 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain DSM 6842 chromosome II contig044,

Gene Summary

Adenine Count

1597026 bp

Thymine Count

1609523 bp

Guanine Count

1496789 bp

Cytosine Count

1440417 bp

Genome Length

6143755 bp

Protein-coding Genes

5310 genes

Non-Coding Genes

311 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase subunit hisfPRUB_RS25945Not AvailableNegative1282727 - 128350028333.9
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerasePRUB_RS25950Not AvailableNegative1283482 - 128421626876.0
imidazole glycerol phosphate synthase subunit hishPRUB_RS25955Not AvailableNegative1284227 - 128481721623.0
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbPRUB_RS25960Not AvailableNegative1284814 - 128587538933.4
histidinol-phosphate transaminasePRUB_RS25965Not AvailableNegative1285878 - 128693638338.0
histidinol dehydrogenasePRUB_RS25970Not AvailableNegative1286933 - 128822545856.8
atp phosphoribosyltransferasePRUB_RS25975Not AvailableNegative1288232 - 128913133192.6
hypothetical proteinPRUB_RS25980Not AvailablePositive1289480 - 12897078757.35
2og-fe(ii) oxygenasePRUB_RS25985Not AvailableNegative1289758 - 129043225603.0
duf1289 domain-containing proteinPRUB_RS25990Not AvailablePositive1290640 - 12908437586.93

Displaying genes 6561 – 6570 of 6641 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.