Pseudoalteromonas rubra DSM 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra DSM 6842 is a rod-shaped bacterium characterized by its unique ecological niche and genetic structure. This species has been identified with two replicons, which may suggest a complex genomic organization that could confer various metabolic capabilities. The strain is cataloged under the accessions AHCD00000000.3 and NZ_AHCD03000044.1, providing a reference for further genomic studies. Pseudoalteromonas rubra is primarily found in marine environments, often associated with surfaces of marine organisms and sediments. This niche indicates its potential role in the marine ecosystem, possibly contributing to the degradation of organic materials and influencing nutrient cycling. The presence of multiple replicons might enable this bacterium to adapt efficiently to its environment, potentially enhancing its survival and functional versatility in various ecological contexts. Understanding the genetic and phenotypic traits of Pseudoalteromonas rubra DSM 6842 can provide insights into its ecological roles, including its interactions with other marine microorganisms and its contributions to marine biogeochemical processes. The study of such microorganisms is crucial for comprehending the dynamics of marine ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
StrainDSM 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain DSM 6842 chromosome II contig044,

Gene Summary

Adenine Count

1597026 bp

Thymine Count

1609523 bp

Guanine Count

1496789 bp

Cytosine Count

1440417 bp

Genome Length

6143755 bp

Protein-coding Genes

5310 genes

Non-Coding Genes

311 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinPRUB_RS25695Not AvailableNegative1217687 - 121873638747.8
cytochrome b562PRUB_RS25700Not AvailablePositive1218818 - 121921315083.3
tonb-dependent receptorPRUB_RS25705Not AvailableNegative1219274 - 122112168763.1
rhombosortase-dependent cadherin domain-containing proteinPRUB_RS25710Not AvailablePositive1221383 - 1224790122933.0
hypothetical proteinPRUB_RS25715Not AvailablePositive1225013 - 12252709856.33
duf6058 family natural product biosynthesis proteinPRUB_RS25720Not AvailableNegative1225318 - 122597125258.9
4-hydroxy-tetrahydrodipicolinate synthasePRUB_RS25725Not AvailablePositive1226126 - 122704033214.6
dead/deah box helicasePRUB_RS25730Not AvailablePositive1227116 - 122841448192.3
glutathione s-transferase family proteinPRUB_RS25735Not AvailableNegative1228462 - 122909724766.0
abgt family transporterPRUB_RS25740Not AvailableNegative1229242 - 123084656904.6

Displaying genes 6511 – 6520 of 6641 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.