Pseudoalteromonas rubra DSM 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra DSM 6842 is a rod-shaped bacterium characterized by its unique ecological niche and genetic structure. This species has been identified with two replicons, which may suggest a complex genomic organization that could confer various metabolic capabilities. The strain is cataloged under the accessions AHCD00000000.3 and NZ_AHCD03000044.1, providing a reference for further genomic studies. Pseudoalteromonas rubra is primarily found in marine environments, often associated with surfaces of marine organisms and sediments. This niche indicates its potential role in the marine ecosystem, possibly contributing to the degradation of organic materials and influencing nutrient cycling. The presence of multiple replicons might enable this bacterium to adapt efficiently to its environment, potentially enhancing its survival and functional versatility in various ecological contexts. Understanding the genetic and phenotypic traits of Pseudoalteromonas rubra DSM 6842 can provide insights into its ecological roles, including its interactions with other marine microorganisms and its contributions to marine biogeochemical processes. The study of such microorganisms is crucial for comprehending the dynamics of marine ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
StrainDSM 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain DSM 6842 chromosome II contig044,

Gene Summary

Adenine Count

1597026 bp

Thymine Count

1609523 bp

Guanine Count

1496789 bp

Cytosine Count

1440417 bp

Genome Length

6143755 bp

Protein-coding Genes

5310 genes

Non-Coding Genes

311 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
upf0042 nucleotide-binding proteinPRUB_a1578Not AvailableNegative92821 - 9366632317.8
pts system, nitrogen regulatory iia componentPRUB_a1579Not AvailableNegative93679 - 9413416680.2
putative sigma-54 modulation proteinPRUB_a1580Not AvailableNegative94137 - 9442411054.3
rna polymerase sigma-54 factorPRUB_a1581Not AvailableNegative94450 - 9595856424.6
lipopolysaccharide export system atp-binding proteinPRUB_a1582Not AvailableNegative96003 - 9672826709.5
lipopolysaccharide export system protein lptaPRUB_a1583Not AvailableNegative96725 - 9726419869.8
lipopolysaccharide export system protein lptcPRUB_a1584Not AvailableNegative97254 - 9780820962.0
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)PRUB_a1585Not AvailableNegative97805 - 9835619933.1
arabinose-5-phosphate isomerasePRUB_a1586Not AvailableNegative98357 - 9932834202.9
cation:h+ antiporterPRUB_a1587Not AvailableNegative99338 - 10029733508.0

Displaying genes 171 – 180 of 6641 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.