Atlantibacter hermannii NBRC 105704

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Atlantibacter

Description

Atlantibacter hermannii NBRC 105704 is a Gram-negative bacterium classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This versatile metabolic adaptation allows A. hermannii to utilize various energy sources depending on the availability of oxygen, which can be advantageous in fluctuating ecological niches. The strain has a single replicon, which is characteristic of certain bacterial genomes and may influence its replication and stability. A. hermannii is documented in the accession database under BAFF00000000.1, providing a reference point for further genetic and biochemical studies. Understanding the traits of A. hermannii, particularly its Gram-negative nature and facultative anaerobic capabilities, can provide insights into its ecological roles. Gram-negative bacteria are often involved in nutrient cycling and can be significant in various environments, including soil and aquatic systems. Their ability to adapt to different oxygen levels further allows them to occupy diverse habitats, contributing to microbial community dynamics and ecological balance. In summary, Atlantibacter hermannii NBRC 105704 exhibits key traits such as being Gram-negative and a facultative anaerobe, which may play a crucial role in its ecological interactions and adaptability in various environments. Further research could elucidate its specific contributions to microbial ecosystems and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusAtlantibacter
SpeciesAtlantibacter hermannii
StrainNBRC 105704

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Atlantibacter hermannii NBRC 105704
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Atlantibacter hermannii NBRC 105704 NBRC 105704 DNA, contig:

Gene Summary

Adenine Count

1031649 bp

Thymine Count

1032730 bp

Guanine Count

1213726 bp

Cytosine Count

1217175 bp

Genome Length

4495280 bp

Protein-coding Genes

4035 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-aspartate oxidaseEH105704_18_00500Not AvailablePositive3976513 - 397813260014.7
trna (adenine-n(6))-methyltransferaseEH105704_18_00510Not AvailableNegative3978117 - 397888428385.0
atp-dependent rna helicase srmbEH105704_18_00520Not AvailablePositive3978982 - 398030749571.5
autonomous glycyl radical cofactorEH105704_18_00530Not AvailableNegative3980355 - 398073814317.1
uracil-dna glycosylaseEH105704_18_00540Not AvailablePositive3981055 - 398173525461.5
putative trna/rrna methyltransferase yfifEH105704_18_00550Not AvailableNegative3981776 - 398282538293.7
thioredoxin 2EH105704_18_00560Not AvailablePositive3983031 - 398345015526.6
hypothetical protein yfipEH105704_18_00570Not AvailablePositive3983531 - 398423226095.6
hypothetical protein yfiqEH105704_18_00580Not AvailablePositive3984265 - 398692297448.6
cdp-diacylglycerol--serine o-phosphatidyltransferaseEH105704_18_00590Not AvailablePositive3987034 - 398839252716.6

Displaying genes 3751 – 3760 of 4243 in total

Metabolites

2147 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 2147 metabolites

Health Effects

No health effects information available for this bacterium.