Novosphingobium barchaimii LL02

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium barchaimii LL02 is a bacterium characterized by the presence of flagella, which suggests it possesses motility that may facilitate its movement in various aquatic environments. This motility can be crucial for its ecological interactions, allowing it to navigate toward nutrients or away from harmful conditions. The organism is noted for having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication within its niche. The genomic information for Novosphingobium barchaimii LL02 is cataloged under the accession number JACU00000000.1, which provides a basis for further genomic analysis and comparison with other strains within the genus. In terms of ecological insight, the motility conferred by flagella likely plays a significant role in the bacterium's ability to colonize specific environments, particularly in water-rich habitats where nutrient availability may fluctuate. This capability could enable Novosphingobium barchaimii LL02 to participate actively in biogeochemical cycles, particularly those involving organic compounds. Understanding the traits of this bacterium can provide valuable information on its role in microbial communities and its potential applications in bioremediation or other environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium barchaimii
StrainLL02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium barchaimii LL02 25411_26, whole genome shotgun

Gene Summary

Adenine Count

953893 bp

Thymine Count

955666 bp

Guanine Count

1700712 bp

Cytosine Count

1697021 bp

Genome Length

5307348 bp

Protein-coding Genes

4960 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
permeaseV474_19885Not AvailablePositive2930202 - 293108931288.2
aconitate hydrataseV474_19890P37032Positive2931226 - 293389896171.8
hypothetical proteinV474_19895Not AvailableNegative2934099 - 29341882963.83
hypothetical proteinV474_19900Not AvailablePositive2934193 - 293484023203.4
holliday junction dna helicase ruvbV474_19905Q2GBA2Negative2935374 - 293640237282.0
holliday junction dna helicase ruvaV474_19910Q2GBA3Negative2936406 - 293701120639.0
hypothetical proteinV474_19915Not AvailableNegative2937215 - 293761614100.2
cell division protein ftskV474_19920Q8FYI0Negative2937649 - 294004887182.7
thiamine monophosphate synthaseV474_19925Not AvailableNegative2940140 - 294071220789.3
alanine racemaseV474_19930O24748Positive2940711 - 294136723234.2

Displaying genes 2771 – 2780 of 5063 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

371 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 371 metabolites

Health Effects

No health effects information available for this bacterium.