Novosphingobium barchaimii LL02

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium barchaimii LL02 is a bacterium characterized by the presence of flagella, which suggests it possesses motility that may facilitate its movement in various aquatic environments. This motility can be crucial for its ecological interactions, allowing it to navigate toward nutrients or away from harmful conditions. The organism is noted for having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in replication within its niche. The genomic information for Novosphingobium barchaimii LL02 is cataloged under the accession number JACU00000000.1, which provides a basis for further genomic analysis and comparison with other strains within the genus. In terms of ecological insight, the motility conferred by flagella likely plays a significant role in the bacterium's ability to colonize specific environments, particularly in water-rich habitats where nutrient availability may fluctuate. This capability could enable Novosphingobium barchaimii LL02 to participate actively in biogeochemical cycles, particularly those involving organic compounds. Understanding the traits of this bacterium can provide valuable information on its role in microbial communities and its potential applications in bioremediation or other environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium barchaimii
StrainLL02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium barchaimii LL02 25411_26, whole genome shotgun

Gene Summary

Adenine Count

953893 bp

Thymine Count

955666 bp

Guanine Count

1700712 bp

Cytosine Count

1697021 bp

Genome Length

5307348 bp

Protein-coding Genes

4960 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family transcription regulatorV474_15075P37947Negative1869406 - 187044035664.9
xylosidaseV474_15080A7LXU0Positive1870586 - 187222060011.6
fumarylacetoacetate hydrolaseV474_15085D4GP28Positive1872232 - 187335939382.9
3-oxoacyl-acp reductaseV474_15090Q9A9Z0Positive1873290 - 187412629726.6
major facilitator transporterV474_15095P15729Positive1874171 - 187559249676.5
epimeraseV474_15100Not AvailablePositive1875607 - 187645530559.1
ligand-gated channelV474_15105Not AvailableNegative1876533 - 187909191269.2
hypothetical proteinV474_15110Not AvailablePositive1879307 - 187978916908.1
lysr family transcriptional regulatorV474_15115Q08597Negative1879786 - 188074534223.3
tonb-denpendent receptorV474_15120Q93SE0Positive1880984 - 1883971105070.0

Displaying genes 1821 – 1830 of 5063 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

371 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 371 metabolites

Health Effects

No health effects information available for this bacterium.