Gordonia polyisoprenivorans VH2

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia polyisoprenivorans VH2 is a notable bacterial species characterized by the presence of flagella, which suggests that it has the capability for motility. This trait can be significant for its ecological interactions and ability to colonize various environments. The organism possesses two replicons, indicating a complex genetic structure that could relate to its adaptability and metabolic versatility. The genomic data for Gordonia polyisoprenivorans VH2 can be accessed through two key accession numbers: NC_016907.1 and NC_016906.1. These genomes likely provide insights into the metabolic pathways and ecological roles of this bacterium, particularly in biodegradation processes. Gordonia species are generally known for their ability to degrade complex organic compounds, including polyisoprenoids, which aligns with the name of this specific strain. This degradation capability suggests a potential ecological role in the breakdown of environmental pollutants, contributing to bioremediation efforts. In summary, Gordonia polyisoprenivorans VH2, with its flagella and dual-replicon structure, exhibits traits that may enhance its survival and functionality in diverse environments. Its potential in biodegradation highlights the ecological importance of this bacterium in natural and anthropogenic ecosystems, particularly in the context of environmental cleanup and sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia polyisoprenivorans
StrainVH2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence.

Gene Summary

Adenine Count

29317 bp

Thymine Count

30475 bp

Guanine Count

58710 bp

Cytosine Count

55992 bp

Genome Length

174494 bp

Protein-coding Genes

164 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pig-l deacetylase family proteinGPOL_RS17960Not AvailableNegative4033217 - 403389424490.0
ce1759 family fmn reductaseGPOL_RS17965O31038Negative4034146 - 403479922446.6
llm class flavin-dependent oxidoreductaseGPOL_RS17970Not AvailableNegative4034796 - 403592041788.9
hypothetical proteinGPOL_RS17975Not AvailablePositive4036069 - 403657516627.1
duf4190 domain-containing proteinGPOL_RS17980Not AvailablePositive4036772 - 403729918167.1
hypothetical proteinGPOL_RS17985Not AvailableNegative4037350 - 403765511097.2
mbth family proteinGPOL_RS17990P59965Negative4037970 - 40382038809.1
non-ribosomal peptide synthetaseGPOL_RS17995Q70LM4Negative4038302 - 4052053484098.0
non-ribosomal peptide synthase/polyketide synthaseGPOL_RS18000Q70LM6Negative4052050 - 40923631414240.0
amino acid adenylation domain-containing proteinGPOL_RS18005Not AvailableNegative4092360 - 4100639296039.0

Displaying genes 3781 – 3790 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

9 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000751(S,S)-butane-2,3-diolC4H10O2Chemical structure of (S,S)-butane-2,3-diolNot available
Average90.121Da
Monoisotopic90.06807956Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003852arseno-mycothiolC17H29AsN2O15SChemical structure of arseno-mycothiolNot available
Average608.4Da
Monoisotopic608.051557Da

Displaying 1–9 of 9 metabolites

Health Effects

No health effects information available for this bacterium.