Gordonia polyisoprenivorans VH2

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Gordoniaceae

Genus

Gordonia

Description

Gordonia polyisoprenivorans VH2 is a notable bacterial species characterized by the presence of flagella, which suggests that it has the capability for motility. This trait can be significant for its ecological interactions and ability to colonize various environments. The organism possesses two replicons, indicating a complex genetic structure that could relate to its adaptability and metabolic versatility. The genomic data for Gordonia polyisoprenivorans VH2 can be accessed through two key accession numbers: NC_016907.1 and NC_016906.1. These genomes likely provide insights into the metabolic pathways and ecological roles of this bacterium, particularly in biodegradation processes. Gordonia species are generally known for their ability to degrade complex organic compounds, including polyisoprenoids, which aligns with the name of this specific strain. This degradation capability suggests a potential ecological role in the breakdown of environmental pollutants, contributing to bioremediation efforts. In summary, Gordonia polyisoprenivorans VH2, with its flagella and dual-replicon structure, exhibits traits that may enhance its survival and functionality in diverse environments. Its potential in biodegradation highlights the ecological importance of this bacterium in natural and anthropogenic ecosystems, particularly in the context of environmental cleanup and sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia polyisoprenivorans
StrainVH2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence.

Gene Summary

Adenine Count

29317 bp

Thymine Count

30475 bp

Guanine Count

58710 bp

Cytosine Count

55992 bp

Genome Length

174494 bp

Protein-coding Genes

164 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator transcription factorGPOL_RS09720Not AvailablePositive2213545 - 221421023839.9
Trna-glyNot AvailableNot AvailablePositive2214294 - 2214364Not Available
Trna-proNot AvailableNot AvailablePositive2214597 - 2214670Not Available
trigger factorGPOL_RS09735C1AVQ6Positive2214767 - 221619451256.0
atp-dependent clp protease proteolytic subunitGPOL_RS09740Q0SGZ0Positive2216592 - 221716720476.6
atp-dependent clp protease proteolytic subunitGPOL_RS09745Q4JWV3Positive2217221 - 221791625236.1
atp-dependent clp protease atp-binding subunit clpxGPOL_RS09750B1MMV6Positive2218198 - 221947846561.0
molybdenum cofactor guanylyltransferaseGPOL_RS09755B2HNF8Positive2219678 - 222029821252.4
valine--trna ligaseGPOL_RS09760Q5Z048Positive2220387 - 222303298085.0
bifunctional tetrahydrofolate synthase/dihydrofolate synthaseGPOL_RS09765I6Y0R5Positive2223200 - 222466651211.6

Displaying genes 2131 – 2140 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

9 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000751(S,S)-butane-2,3-diolC4H10O2Chemical structure of (S,S)-butane-2,3-diolNot available
Average90.121Da
Monoisotopic90.06807956Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003852arseno-mycothiolC17H29AsN2O15SChemical structure of arseno-mycothiolNot available
Average608.4Da
Monoisotopic608.051557Da

Displaying 1–9 of 9 metabolites

Health Effects

No health effects information available for this bacterium.