Limnohabitans sp. Rim8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. Rim8 is a distinct microbial species characterized by having a single replicon. This trait suggests a streamlined genomic architecture, which can influence its adaptability and functionality within aquatic environments. The complete genome of Limnohabitans sp. Rim8 is available under the accession number NESO00000000.1, which provides a basis for further genomic studies and comparative analyses with other related microorganisms. The genus Limnohabitans is known for its presence in freshwater ecosystems, where it plays a significant role in nutrient cycling and the degradation of organic matter. The specific ecological niche of Limnohabitans sp. Rim8 may contribute to the overall health and functioning of freshwater habitats, potentially influencing microbial community dynamics. Biologically, the presence of a single replicon might indicate an evolutionary strategy that favors rapid growth and reproduction under certain environmental conditions. This trait could be advantageous in fluctuating aquatic environments, where efficient resource utilization is critical for survival. Understanding the genomic and ecological traits of Limnohabitans sp. Rim8 can provide insights into its role in freshwater ecosystems and its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. Rim8
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. Rim8 LimA-Rim8-C25, whole genome shotgun

Gene Summary

Adenine Count

646292 bp

Thymine Count

618446 bp

Guanine Count

774153 bp

Cytosine Count

819694 bp

Genome Length

2858585 bp

Protein-coding Genes

2737 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c4-dicarboxylate abc transporterB9Z36_12945Not AvailableNegative2673612 - 267489545619.9
c4-dicarboxylate abc transporter permeaseB9Z36_12950Not AvailableNegative2674892 - 267540719184.9
c4-dicarboxylate abc transporter substrate-binding proteinB9Z36_12955Not AvailableNegative2675493 - 267647635045.2
Trna-argNot AvailableNot AvailablePositive2676511 - 2676586Not Available
cytochrome c5 family proteinB9Z36_12965Not AvailablePositive2676664 - 267717017509.8
hypothetical proteinB9Z36_12970Not AvailableNegative2677217 - 267774720044.6
alpha/beta hydrolaseB9Z36_12975Not AvailableNegative2677740 - 267869035051.4
duf4440 domain-containing proteinB9Z36_12980Not AvailableNegative2678717 - 267916615949.9
f0f1 atp synthase subunit epsilonB9Z36_12985Not AvailableNegative2679251 - 267966714802.6
f0f1 atp synthase subunit betaB9Z36_12990Not AvailableNegative2679676 - 268107950441.8

Displaying genes 2571 – 2580 of 2788 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.