Limnohabitans sp. Rim8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. Rim8 is a distinct microbial species characterized by having a single replicon. This trait suggests a streamlined genomic architecture, which can influence its adaptability and functionality within aquatic environments. The complete genome of Limnohabitans sp. Rim8 is available under the accession number NESO00000000.1, which provides a basis for further genomic studies and comparative analyses with other related microorganisms. The genus Limnohabitans is known for its presence in freshwater ecosystems, where it plays a significant role in nutrient cycling and the degradation of organic matter. The specific ecological niche of Limnohabitans sp. Rim8 may contribute to the overall health and functioning of freshwater habitats, potentially influencing microbial community dynamics. Biologically, the presence of a single replicon might indicate an evolutionary strategy that favors rapid growth and reproduction under certain environmental conditions. This trait could be advantageous in fluctuating aquatic environments, where efficient resource utilization is critical for survival. Understanding the genomic and ecological traits of Limnohabitans sp. Rim8 can provide insights into its role in freshwater ecosystems and its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. Rim8
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. Rim8 LimA-Rim8-C25, whole genome shotgun

Gene Summary

Adenine Count

646292 bp

Thymine Count

618446 bp

Guanine Count

774153 bp

Cytosine Count

819694 bp

Genome Length

2858585 bp

Protein-coding Genes

2737 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xylose isomeraseB9Z36_12245Not AvailableNegative2544528 - 254542132655.1
4-hydroxyphenylpyruvate dioxygenaseB9Z36_12250Not AvailableNegative2545437 - 254631532458.5
shikimate dehydrogenaseB9Z36_12255Not AvailableNegative2546334 - 254718529883.2
type ii 3-dehydroquinate dehydrataseB9Z36_12260Not AvailableNegative2547192 - 254763816330.7
abc transporter substrate-binding proteinB9Z36_12265Not AvailableNegative2547706 - 254870135805.5
l-dehydroascorbate transporter large permease subunitB9Z36_12270Not AvailableNegative2548791 - 255006845017.5
c4-dicarboxylate abc transporter permeaseB9Z36_12275Not AvailableNegative2550090 - 255062019556.4
tetr family transcriptional regulatorB9Z36_12280Not AvailableNegative2550727 - 255139224717.7
hypothetical proteinB9Z36_12285Not AvailablePositive2551502 - 255223926595.4
oxidoreductaseB9Z36_12290Not AvailablePositive2552236 - 255329738130.6

Displaying genes 2431 – 2440 of 2788 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.