Limnohabitans sp. Rim8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. Rim8 is a distinct microbial species characterized by having a single replicon. This trait suggests a streamlined genomic architecture, which can influence its adaptability and functionality within aquatic environments. The complete genome of Limnohabitans sp. Rim8 is available under the accession number NESO00000000.1, which provides a basis for further genomic studies and comparative analyses with other related microorganisms. The genus Limnohabitans is known for its presence in freshwater ecosystems, where it plays a significant role in nutrient cycling and the degradation of organic matter. The specific ecological niche of Limnohabitans sp. Rim8 may contribute to the overall health and functioning of freshwater habitats, potentially influencing microbial community dynamics. Biologically, the presence of a single replicon might indicate an evolutionary strategy that favors rapid growth and reproduction under certain environmental conditions. This trait could be advantageous in fluctuating aquatic environments, where efficient resource utilization is critical for survival. Understanding the genomic and ecological traits of Limnohabitans sp. Rim8 can provide insights into its role in freshwater ecosystems and its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. Rim8
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. Rim8 LimA-Rim8-C25, whole genome shotgun

Gene Summary

Adenine Count

646292 bp

Thymine Count

618446 bp

Guanine Count

774153 bp

Cytosine Count

819694 bp

Genome Length

2858585 bp

Protein-coding Genes

2737 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabB9Z36_08270Not AvailableNegative1693925 - 169473428461.8
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseB9Z36_08275Not AvailablePositive1694767 - 169627554630.7
hypothetical proteinB9Z36_08280Not AvailablePositive1696275 - 16965509899.23
hypothetical proteinB9Z36_08285Not AvailableNegative1696547 - 169736527545.3
threonylcarbamoyl-amp synthaseB9Z36_08290Not AvailableNegative1697435 - 169845735489.4
5-(carboxyamino)imidazole ribonucleotide synthaseB9Z36_08295Not AvailableNegative1698481 - 169965341234.9
5-(carboxyamino)imidazole ribonucleotide mutaseB9Z36_08300Not AvailableNegative1699650 - 170014116870.6
thioredoxinB9Z36_08305Not AvailablePositive1700188 - 170114435047.0
phosphoribosylaminoimidazolesuccinocarboxamide synthaseB9Z36_08310Not AvailableNegative1701160 - 170206532840.3
fructose-1,6-bisphosphate aldolaseB9Z36_08315Not AvailableNegative1702069 - 170313338055.9

Displaying genes 1641 – 1650 of 2788 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.