Limnohabitans sp. Rim8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. Rim8 is a distinct microbial species characterized by having a single replicon. This trait suggests a streamlined genomic architecture, which can influence its adaptability and functionality within aquatic environments. The complete genome of Limnohabitans sp. Rim8 is available under the accession number NESO00000000.1, which provides a basis for further genomic studies and comparative analyses with other related microorganisms. The genus Limnohabitans is known for its presence in freshwater ecosystems, where it plays a significant role in nutrient cycling and the degradation of organic matter. The specific ecological niche of Limnohabitans sp. Rim8 may contribute to the overall health and functioning of freshwater habitats, potentially influencing microbial community dynamics. Biologically, the presence of a single replicon might indicate an evolutionary strategy that favors rapid growth and reproduction under certain environmental conditions. This trait could be advantageous in fluctuating aquatic environments, where efficient resource utilization is critical for survival. Understanding the genomic and ecological traits of Limnohabitans sp. Rim8 can provide insights into its role in freshwater ecosystems and its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. Rim8
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. Rim8 LimA-Rim8-C25, whole genome shotgun

Gene Summary

Adenine Count

646292 bp

Thymine Count

618446 bp

Guanine Count

774153 bp

Cytosine Count

819694 bp

Genome Length

2858585 bp

Protein-coding Genes

2737 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deacetylaseB9Z36_06800Not AvailableNegative1390096 - 139104934751.3
lytic murein transglycosylase bB9Z36_06805Not AvailablePositive1391201 - 139225938578.5
hypothetical proteinB9Z36_06810Not AvailableNegative1392271 - 139257911440.7
trna epoxyqueuosine(34) reductase quegB9Z36_06815Not AvailableNegative1392628 - 139369239364.0
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeB9Z36_06820Not AvailablePositive1393714 - 139420818069.4
n-acetylmuramoyl-l-alanine amidaseB9Z36_06825Not AvailablePositive1394205 - 139561750602.9
hypothetical proteinB9Z36_06830Not AvailablePositive1395619 - 139676740962.0
hypothetical proteinB9Z36_06835Not AvailablePositive1396764 - 13970159690.72
hypothetical proteinB9Z36_06840Not AvailableNegative1397024 - 139767724186.7
dna mismatch repair protein mutlB9Z36_06845Not AvailablePositive1397711 - 139965170100.3

Displaying genes 1351 – 1360 of 2788 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.