Clavibacter nebraskensis NCPPB 2581

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter nebraskensis NCPPB 2581 is a Gram-positive, rod-shaped bacterium characterized by the presence of flagella. This motility structure may provide advantages in its ecological niche, potentially aiding in its movement through various environments. The bacterium possesses a single replicon, which is significant in understanding its genomic organization and replication mechanisms. The accession number for Clavibacter nebraskensis NCPPB 2581 is NC_020891.1, indicating that its genetic information is documented in a public database, allowing for further study and comparison with other microbial species. The Gram-positive nature of this bacterium suggests that it has a thick peptidoglycan layer, which is characteristic of this group and may contribute to its resilience in certain conditions. In terms of ecological insights, the presence of flagella indicates that Clavibacter nebraskensis NCPPB 2581 could occupy a variety of habitats, potentially including soil or plant environments where motility might be advantageous for colonization or nutrient acquisition. Understanding its motility and genetic structure could offer information on its role in microbial communities and its interactions with other organisms in its ecosystem.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter nebraskensis
StrainNCPPB 2581

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter nebraskensis NCPPB 2581
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter nebraskensis NCPPB 2581, complete sequence.

Gene Summary

Adenine Count

411061 bp

Thymine Count

415985 bp

Guanine Count

1119225 bp

Cytosine Count

1117325 bp

Genome Length

3063596 bp

Protein-coding Genes

2898 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l28CMN_RS14325Not AvailableNegative3024032 - 30242688643.66
fur family transcriptional regulatorCMN_RS14330Not AvailableNegative3024464 - 302490715362.8
metal abc transporter permeaseCMN_RS14335Not AvailableNegative3024904 - 302583031305.3
metal abc transporter atp-binding proteinCMN_RS14340Not AvailableNegative3025827 - 302670231352.2
metal abc transporter substrate-binding proteinCMN_RS14345Not AvailableNegative3026699 - 302765232592.8
dihydrolipoamide acetyltransferase family proteinCMN_RS14350Not AvailableNegative3027722 - 302912249173.0
alpha-ketoacid dehydrogenase subunit betaCMN_RS14355Not AvailableNegative3029179 - 303014434943.0
thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alphaCMN_RS14360Not AvailableNegative3030231 - 303134340586.9
pyridoxal phosphate-dependent aminotransferaseCMN_RS14365Not AvailableNegative3031353 - 303246839346.0
phage holin family proteinCMN_RS14370Not AvailablePositive3032539 - 303293413848.6

Displaying genes 2911 – 2920 of 2952 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.