Candidatus Burkholderia pumila str. UZHbot3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Candidatus Burkholderia pumila str. UZHbot3 is a bacterial strain characterized by a single replicon, which may influence its genomic stability and adaptability. The organism's genomic data is available under the accession number LELG00000000.1, facilitating further research and analysis. As a member of the Burkholderia genus, Candidatus Burkholderia pumila str. UZHbot3 may possess traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse environments. Burkholderia species are known for their roles in various ecological contexts, including plant interactions and soil ecosystems. The presence of a single replicon suggests a streamlined genetic structure that could be advantageous for specific ecological niches. This can lead to efficient replication and stability during environmental fluctuations. Such traits are crucial for survival in competitive microbial communities, where resource availability can vary. In terms of ecological insight, Candidatus Burkholderia pumila str. UZHbot3 may play a role in plant health or biogeochemical cycling, similar to other members of its genus. Understanding the specific interactions and capabilities of this strain could provide valuable information in the context of microbial ecology and its potential applications in agriculture or bioremediation. Further research into its characteristics and behaviors will be essential for fully appreciating its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesCandidatus Burkholderia pumila
StrainUZHbot3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Burkholderia pumila strain UZHbot3 BPMIctg547, whole

Gene Summary

Adenine Count

747536 bp

Thymine Count

752469 bp

Guanine Count

1090049 bp

Cytosine Count

1091169 bp

Genome Length

3681223 bp

Protein-coding Genes

1737 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
periplasmic thiol:disulfide interchange protein dsbaBPMI_04164Q9RHV8Positive1284949 - 128561424472.6
chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component cheyBPMI_04180cNot AvailableNegative1292601 - 12928378442.88
rna polymerase sigma factor rpodBPMI_04146cP52325Negative1296303 - 129837878352.7
dna primaseBPMI_04147cP57028Negative1298795 - 130067569067.4
transamidase gatb domain proteinBPMI_04148cC5DXN2Negative1300672 - 130114516738.3
tsad/kae1/qri7 protein, required for threonylcarbamoyladenosine t(6)a37 formation in trnaBPMI_04153Q13RW9Positive1302644 - 130367236348.9
gtp cyclohydrolase i type 2BPMI_04156cQ13RX0Negative1304307 - 130511029761.8
1-deoxy-d-xylulose 5-phosphate synthaseBPMI_04157cQ13RX1Negative1305249 - 130716868631.5
geranylgeranyl pyrophosphate synthetaseBPMI_04158cQ45220Negative1307264 - 130815131138.2
exodeoxyribonuclease vii small subunitBPMI_04159cQ393P2Negative1308148 - 130848311773.5

Displaying genes 711 – 720 of 1784 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

150 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 150 metabolites

Health Effects

No health effects information available for this bacterium.